CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES02705
EES05663

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32150.1	EES02705	AT5G46860.1	24556609
AT4G32150.1	EES05663	AT5G46860.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018408_P001	Maize	cytosol	92.54	93.36
Os02t0803600-01	Rice	plasma membrane	84.21	84.96
OQU75937	Sorghum	plasma membrane	79.82	82.35
TraesCS6A01G371800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	80.7	78.97
TraesCS6D01G355800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	79.82	78.11
TraesCS6B01G409400.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	79.82	78.11
GSMUA_Achr9P09180_001	Banana	endoplasmic reticulum, plasma membrane	69.74	72.27
VIT_04s0008g05650.t01	Wine grape	extracellular	68.42	70.91
GSMUA_Achr6P35140_001	Banana	plasma membrane	68.42	70.91
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	66.23	68.95
KRH73537	Soybean	endoplasmic reticulum	66.23	68.95
CDY61387	Canola	endoplasmic reticulum, plasma membrane	66.23	68.95
KRH14588	Soybean	endoplasmic reticulum	65.79	68.49
AT4G32150.1	Thale cress	golgi, plasma membrane	65.79	68.49
CDX75224	Canola	endoplasmic reticulum, plasma membrane	65.79	68.18
PGSC0003DMT400067225	Potato	mitochondrion	65.79	68.18
Solyc06g065950.2.1	Tomato	endoplasmic reticulum, nucleus	65.79	68.18
CDX68821	Canola	endoplasmic reticulum, plasma membrane	65.35	67.73
CDX69781	Canola	plasma membrane	65.35	67.42
CDX97084	Canola	plasma membrane	64.91	66.97
AT2G25340.1	Thale cress	endoplasmic reticulum, plasma membrane	64.04	66.67
Bra008987.1-P	Field mustard	mitochondrion	64.04	66.06
KRH03646	Soybean	plasma membrane	61.84	62.67
KRH20159	Soybean	plastid	61.4	62.5
AT5G11150.2	Thale cress	golgi, plasma membrane	61.84	62.39
EES13179	Sorghum	endoplasmic reticulum, plasma membrane	51.32	52.7
Bra011325.1-P	Field mustard	endoplasmic reticulum	61.84	38.63
EER96027	Sorghum	extracellular	36.4	37.39
KXG40114	Sorghum	cytosol, vacuole	35.09	36.36
OQU90815	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	35.09	36.36
KXG24150	Sorghum	cytosol	33.77	33.62
KXG25383	Sorghum	plastid	35.53	33.61
EES09956	Sorghum	cytosol, mitochondrion, nucleus, plastid	11.4	31.33
KXG34786	Sorghum	cytosol	32.89	30.12

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	EntrezGene:8084659	UniProt:C5XV36	EnsemblPlants:EES05972
ProteinID:EES05972	ProteinID:EES05972.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf
InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859
PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF104	SMART:SM01270	EnsemblPlantsGene:SORBI_3004G334900	SUPFAM:SSF58038
SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI0001A85B86	RefSeq:XP_002452996.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:66711172..66712930

Molecular Weight (calculated)

25343.7 Da

IEP (calculated)

8.868

GRAVY (calculated)

-0.030

Length

228 amino acids

Sequence
(BLAST)

001: MGKIEYAVVA RGAVVLAEHY GASAAGGNAG AVARQVLERL PAGGAGGDDC NVSYTQDLHV FHVKRTDGLT ALCMADDAAG RRVPFAFLED IHGRFVKAYG
101: RAALTALAYA MNDEFSRVLA QQMDYYSNDA SADRINRMRG EIDQVRNVMI DNIDRVLERG ERLELLVDKT ATMQGNTMRF KRQARRFRNT MWWRNVKLTA
201: AVIFILTVIL YLVLAYMCHG FTLPSCVP

Best Arabidopsis Sequence Match ( AT4G32150.1 )
(BLAST)

001: MAILYALVAR GTVVLSEFTA TSTNASTIAK QILEKVPGDN DSNVSYSQDR YVFHVKRTDG LTVLCMAEET AGRRIPFAFL EDIHQRFVRT YGRAVHTALA
101: YAMNEEFSRV LSQQIDYYSN DPNADRINRI KGEMNQVRGV MIENIDKVLD RGERLELLVD KTANMQGNTF RFRKQARRFR SNVWWRNCKL TVLLILLLLV
201: IIYIAVAFLC HGPTLPSCI

Arabidopsis Description

VAMP711Vesicle-associated membrane protein 711 [Source:UniProtKB/Swiss-Prot;Acc:O49377]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.