Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- endoplasmic reticulum 4
- extracellular 3
- vacuole 3
- plasma membrane 4
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G32150.1 | Thale cress | golgi, plasma membrane | 85.39 | 85.39 |
| VIT_04s0008g05650.t01 | Wine grape | extracellular | 81.74 | 81.36 |
| KRH73537 | Soybean | endoplasmic reticulum | 79.91 | 79.91 |
| PGSC0003DMT400067225 | Potato | mitochondrion | 79.45 | 79.09 |
| Solyc06g065950.2.1 | Tomato | endoplasmic reticulum, nucleus | 79.45 | 79.09 |
| KRH14588 | Soybean | endoplasmic reticulum | 79.0 | 79.0 |
| GSMUA_Achr9P09180_001 | Banana | endoplasmic reticulum, plasma membrane | 77.17 | 76.82 |
| AT5G11150.2 | Thale cress | golgi, plasma membrane | 79.0 | 76.55 |
| GSMUA_Achr6P35140_001 | Banana | plasma membrane | 76.26 | 75.91 |
| OQU75937 | Sorghum | plasma membrane | 73.06 | 72.4 |
| Os06t0174400-01 | Rice | plasma membrane | 69.86 | 69.23 |
| TraesCS7A01G136300.1 | Wheat | plasma membrane, plastid | 68.04 | 67.42 |
| TraesCS7B01G037300.1 | Wheat | plasma membrane, plastid | 68.04 | 67.42 |
| TraesCS7D01G136300.1 | Wheat | endoplasmic reticulum, plasma membrane | 67.58 | 66.97 |
| Os02t0803600-01 | Rice | plasma membrane | 68.04 | 65.93 |
| KRH03646 | Soybean | plasma membrane | 66.67 | 64.89 |
| KRH20159 | Soybean | plastid | 66.21 | 64.73 |
| EES05972 | Sorghum | cytosol | 66.67 | 64.04 |
| TraesCS6A01G371800.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 67.58 | 63.52 |
| TraesCS6B01G409400.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 67.12 | 63.09 |
| TraesCS6D01G355800.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 67.12 | 63.09 |
| Zm00001d037483_P002 | Maize | plasma membrane | 73.06 | 62.99 |
| Zm00001d018408_P001 | Maize | cytosol | 63.93 | 61.95 |
| HORVU7Hr1G028250.1 | Barley | peroxisome, plasma membrane | 66.21 | 58.94 |
| AT5G22360.1 | Thale cress | plasma membrane | 53.88 | 53.39 |
| AT1G04750.1 | Thale cress | endoplasmic reticulum, golgi | 36.53 | 36.53 |
| AT1G04760.2 | Thale cress | cytosol | 36.07 | 35.91 |
| AT2G33120.2 | Thale cress | golgi | 35.16 | 33.62 |
| AT3G54300.3 | Thale cress | cytosol | 36.07 | 32.92 |
| AT4G15780.1 | Thale cress | cytosol | 26.48 | 31.52 |
| AT2G33110.1 | Thale cress | extracellular, golgi | 28.77 | 29.03 |
| AT2G32670.1 | Thale cress | endoplasmic reticulum, golgi | 35.16 | 27.02 |
| AT3G24890.2 | Thale cress | cytosol | 12.79 | 22.58 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.5.1 | Gene3D:3.30.450.50 | EntrezGene:817072 | UniProt:A0A178VTB3 | ProteinID:AAD23657.1 |
| ProteinID:AEC07690.1 | ArrayExpress:AT2G25340 | EnsemblPlantsGene:AT2G25340 | RefSeq:AT2G25340 | TAIR:AT2G25340 | RefSeq:AT2G25340-TAIR-G |
| EnsemblPlants:AT2G25340.1 | TAIR:AT2G25340.1 | Symbol:ATVAMP712 | Unigene:At.52906 | GO:GO:0000149 | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0006810 | GO:GO:0006887 |
| GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0031902 | InterPro:IPR001388 | InterPro:IPR010908 |
| InterPro:Longin-like_dom_sf | InterPro:Longin_dom | RefSeq:NP_180106.1 | ProteinID:OAP09690.1 | PFAM:PF00957 | PFAM:PF13774 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0007095 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0020030 | PO:PO:0025022 | PRINTS:PR00219 | ScanProsite:PS00417 | PFscan:PS50859 | PFscan:PS50892 |
| PANTHER:PTHR21136 | PANTHER:PTHR21136:SF104 | UniProt:Q9SIQ9 | SMART:SM01270 | SUPFAM:SSF58038 | SUPFAM:SSF64356 |
| SignalP:SignalP-noTM | InterPro:Synaptobrevin | TMHMM:TMhelix | UniParc:UPI000013802E | SEG:seg | : |
Description
VAMP712VAMP712 [Source:UniProtKB/TrEMBL;Acc:A0A178VTB3]
Coordinates
chr2:-:10792664..10793832
Molecular Weight (calculated)
24967.1 Da
IEP (calculated)
8.315
GRAVY (calculated)
-0.135
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MSILYALVAR GTVVLAELST TSTNASTIAK QILEKIPGNG DSHVSYSQDR YVFHVKRTDG LTVLCMADED AGRRIPFSFL EDIHQRFVRT YGRAIHSAQA
101: YAMNDEFSRV LNQQIEYYSN DPNADTISRI KGEMNQVRDV MIENIDNILD RGERLELLVD KTANMQGNTF RFRKQTRRFN NTVWWRNCKL TLLLILVLLV
201: IIYIGVAFAC HGPTLPSCV
101: YAMNDEFSRV LNQQIEYYSN DPNADTISRI KGEMNQVRDV MIENIDNILD RGERLELLVD KTANMQGNTF RFRKQTRRFN NTVWWRNCKL TLLLILVLLV
201: IIYIGVAFAC HGPTLPSCV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.