Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67594 | Canola | cytosol | 95.42 | 95.02 |
| Bra007063.1-P | Field mustard | cytosol, plasma membrane | 95.0 | 95.0 |
| CDX76153 | Canola | cytosol | 95.42 | 94.63 |
| Bra003177.1-P | Field mustard | cytosol | 95.0 | 94.61 |
| CDY07551 | Canola | cytosol | 94.58 | 94.58 |
| CDX78228 | Canola | cytosol, plasma membrane | 94.58 | 94.58 |
| CDX73490 | Canola | plasma membrane | 94.58 | 94.19 |
| Bra014823.1-P | Field mustard | golgi | 94.58 | 93.8 |
| KRH36005 | Soybean | endoplasmic reticulum | 87.5 | 88.24 |
| PGSC0003DMT400061574 | Potato | endoplasmic reticulum, mitochondrion, plasma membrane | 87.5 | 87.5 |
| Solyc11g006780.1.1 | Tomato | cytosol, mitochondrion, plasma membrane | 87.08 | 87.08 |
| CDY13199 | Canola | plasma membrane | 70.0 | 84.42 |
| VIT_13s0101g00410.t01 | Wine grape | endoplasmic reticulum, golgi | 83.75 | 84.1 |
| GSMUA_Achr8P32930_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 80.83 | 81.51 |
| Os08t0558600-01 | Rice | extracellular | 75.0 | 74.69 |
| TraesCS7A01G279100.1 | Wheat | cytosol, plastid | 74.17 | 73.55 |
| TraesCS7D01G278900.1 | Wheat | plasma membrane, plastid | 74.17 | 73.55 |
| KXG25383 | Sorghum | plastid | 73.75 | 73.44 |
| TraesCS7B01G181100.1 | Wheat | cytosol, plastid | 73.75 | 73.14 |
| Zm00001d031942_P003 | Maize | plastid | 73.33 | 73.03 |
| KRG90750 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 76.25 | 72.33 |
| AT1G04750.1 | Thale cress | endoplasmic reticulum, golgi | 56.67 | 62.1 |
| AT1G04760.2 | Thale cress | cytosol | 56.67 | 61.82 |
| AT2G33120.2 | Thale cress | golgi | 57.08 | 59.83 |
| AT4G15780.1 | Thale cress | cytosol | 41.25 | 53.8 |
| AT2G33110.1 | Thale cress | extracellular, golgi | 46.67 | 51.61 |
| EES09956 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 17.5 | 50.6 |
| AT2G32670.1 | Thale cress | endoplasmic reticulum, golgi | 57.5 | 48.42 |
| AT3G24890.2 | Thale cress | cytosol | 20.0 | 38.71 |
| AT4G32150.1 | Thale cress | golgi, plasma membrane | 32.92 | 36.07 |
| AT2G25340.1 | Thale cress | endoplasmic reticulum, plasma membrane | 32.92 | 36.07 |
| AT5G11150.2 | Thale cress | golgi, plasma membrane | 32.5 | 34.51 |
| AT5G22360.1 | Thale cress | plasma membrane | 31.25 | 33.94 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.5.1 | Gene3D:3.30.450.50 | EntrezGene:824597 | UniProt:A0A178VIG0 | ProteinID:AEE79210.1 |
| ProteinID:AEE79211.1 | EMBL:AK229117 | ProteinID:ANM64005.1 | ArrayExpress:AT3G54300 | EnsemblPlantsGene:AT3G54300 | RefSeq:AT3G54300 |
| TAIR:AT3G54300 | RefSeq:AT3G54300-TAIR-G | EnsemblPlants:AT3G54300.3 | Symbol:ATVAMP727 | EMBL:BT011606 | EMBL:BT012242 |
| ProteinID:CAB71004.1 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0006623 |
| GO:GO:0006810 | GO:GO:0006887 | GO:GO:0006906 | GO:GO:0007033 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0010008 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 |
| GO:GO:0031201 | GO:GO:0031901 | GO:GO:0033263 | InterPro:IPR001388 | InterPro:IPR010908 | InterPro:Longin-like_dom_sf |
| InterPro:Longin_dom | RefSeq:NP_001078283.1 | RefSeq:NP_001326058.1 | RefSeq:NP_190998.1 | ProteinID:OAP06099.1 | PFAM:PF00957 |
| PFAM:PF13774 | PRINTS:PR00219 | ScanProsite:PS00417 | PFscan:PS50859 | PFscan:PS50892 | PANTHER:PTHR21136 |
| PANTHER:PTHR21136:SF169 | UniProt:Q9M376 | SMART:SM01270 | SUPFAM:SSF58038 | SUPFAM:SSF64356 | InterPro:Synaptobrevin |
| TMHMM:TMhelix | UniParc:UPI0000138037 | SEG:seg | : | : | : |
Description
VAMP727Vesicle-associated membrane protein 727 [Source:UniProtKB/Swiss-Prot;Acc:Q9M376]
Coordinates
chr3:-:20108207..20110883
Molecular Weight (calculated)
27461.0 Da
IEP (calculated)
6.362
GRAVY (calculated)
-0.255
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQKGLIYSF VAKGTVVLAE HTPYSGNFST IAVQCLQKLP TNSSKYTYSC DGHTFNFLVD NGFVFLVVAD ESTGRSVPFV FLERVKEDFK KRYEASIKND
101: ERHPLADEDE DDDLFGDRFS VAYNLDREFG PILKEHMQYC MSHPEEMSKL SKLKAQITEV KGIMMDNIEK VLDRGEKIEL LVDKTENLQF QADSFQRQGR
201: QLRRKMWLQS LQMKLMVAGA VFSFILIVWV VACGGFKCSS
101: ERHPLADEDE DDDLFGDRFS VAYNLDREFG PILKEHMQYC MSHPEEMSKL SKLKAQITEV KGIMMDNIEK VLDRGEKIEL LVDKTENLQF QADSFQRQGR
201: QLRRKMWLQS LQMKLMVAGA VFSFILIVWV VACGGFKCSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.