Factsheet for GSMUA_Achr8P32930_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 3
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36005	Soybean	endoplasmic reticulum	82.35	82.35
VIT_13s0101g00410.t01	Wine grape	endoplasmic reticulum, golgi	81.93	81.59
AT3G54300.3	Thale cress	cytosol	81.51	80.83
PGSC0003DMT400061574	Potato	endoplasmic reticulum, mitochondrion, plasma membrane	80.25	79.58
CDX67594	Canola	cytosol	80.25	79.25
Os08t0558600-01	Rice	extracellular	80.25	79.25
CDY07551	Canola	cytosol	79.83	79.17
Bra014823.1-P	Field mustard	golgi	80.25	78.93
Bra003177.1-P	Field mustard	cytosol	79.83	78.84
Solyc11g006780.1.1	Tomato	cytosol, mitochondrion, plasma membrane	79.41	78.75
CDX76153	Canola	cytosol	79.83	78.51
TraesCS7D01G278900.1	Wheat	plasma membrane, plastid	79.83	78.51
TraesCS7B01G181100.1	Wheat	cytosol, plastid	79.83	78.51
TraesCS7A01G279100.1	Wheat	cytosol, plastid	79.83	78.51
Zm00001d031942_P003	Maize	plastid	79.41	78.42
KXG25383	Sorghum	plastid	79.41	78.42
Bra007063.1-P	Field mustard	cytosol, plasma membrane	78.57	77.92
CDX78228	Canola	cytosol, plasma membrane	78.15	77.5
CDX73490	Canola	plasma membrane	78.15	77.18
CDY13199	Canola	plasma membrane	60.08	71.86
KRG90750	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	72.69	68.38
GSMUA_Achr8P15290_001	Banana	cytosol, endoplasmic reticulum	60.08	65.3
GSMUA_Achr9P25440_001	Banana	cytosol, vacuole	60.08	65.3
GSMUA_Achr2P17740_001	Banana	cytosol	60.08	65.3
GSMUA_Achr9P11030_001	Banana	cytosol	58.82	63.93
GSMUA_Achr7P01760_001	Banana	plasma membrane	57.98	63.01
GSMUA_Achr4P22260_001	Banana	cytosol, extracellular	56.72	61.64
GSMUA_Achr6P04490_001	Banana	cytosol, extracellular	55.04	59.55
EES09956	Sorghum	cytosol, mitochondrion, nucleus, plastid	19.33	55.42
GSMUA_Achr8P03260_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	47.48	51.36
GSMUA_Achr9P30970_001	Banana	cytosol	44.96	46.93
GSMUA_Achr11P...	Banana	endoplasmic reticulum	33.61	36.7
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	33.19	36.24
GSMUA_Achr9P09180_001	Banana	endoplasmic reticulum, plasma membrane	31.09	33.64
GSMUA_Achr6P35140_001	Banana	plasma membrane	31.09	33.64

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0006623	GO:GO:0006810	GO:GO:0007033	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201
GO:GO:0033263	EnsemblPlantsGene:GSMUA_Achr8G32930_001	EnsemblPlants:GSMUA_Achr8P32930_001	EnsemblPlants:GSMUA_Achr8T32930_001	InterPro:IPR001388	InterPro:IPR010908
InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M0TVP5	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219
ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF169	SMART:SM01270
SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI000296CB75	SEG:seg

Description

Vesicle-associated membrane protein 727 [Source:GMGC_GENE;Acc:GSMUA_Achr8G32930_001]

Coordinates

chr8:-:34133783..34138946

Molecular Weight (calculated)

27382.2 Da

IEP (calculated)

6.671

GRAVY (calculated)

-0.173

Length

238 amino acids

Sequence
(BLAST)

001: MSKQPLIYSF VAKGAVVLAE HTTFSGNFST IAVQCLQKLP RNSNKFTYSC DGHTFNFLLD KEFVFLVVAD EAVGRSVPFV FLERVKEDFM QRYGAIIDGG
101: GPHPLADEDE DDDLFEDRFS IAYNLDREFG PRLKEHMQYC INHPEEMSKL SKLRAQITEV KGIMMDNIEK VLDRGEKIEL LVDKTESLQF QADSFQRQGR
201: QLRRKMWLQN IRFKLILAGT LIALILIIWL RACGGFKC

Best Arabidopsis Sequence Match ( AT3G54300.1 )
(BLAST)

001: MSQKGLIYSF VAKGTVVLAE HTPYSGNFST IAVQCLQKLP TNSSKYTYSC DGHTFNFLVD NGFVFLVVAD ESTGRSVPFV FLERVKEDFK KRYEASIKND
101: ERHPLADEDE DDDLFGDRFS VAYNLDREFG PILKEHMQYC MSHPEEMSKL SKLKAQITEV KGIMMDNIEK VLDRGEKIEL LVDKTENLQF QADSFQRQGR
201: QLRRKMWLQS LQMKLMVAGA VFSFILIVWV VACGGFKCSS

Arabidopsis Description

VAMP727Vesicle-associated membrane protein 727 [Source:UniProtKB/Swiss-Prot;Acc:Q9M376]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.