CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
mitochondrion 3
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g006780.1.1	Tomato	cytosol, mitochondrion, plasma membrane	89.5	88.75
VIT_13s0101g00410.t01	Wine grape	endoplasmic reticulum, golgi	89.08	88.7
PGSC0003DMT400061574	Potato	endoplasmic reticulum, mitochondrion, plasma membrane	89.08	88.33
CDX67594	Canola	cytosol	89.08	87.97
Bra003177.1-P	Field mustard	cytosol	88.66	87.55
AT3G54300.3	Thale cress	cytosol	88.24	87.5
CDY07551	Canola	cytosol	88.24	87.5
CDX76153	Canola	cytosol	88.66	87.19
Bra014823.1-P	Field mustard	golgi	87.82	86.36
CDX78228	Canola	cytosol, plasma membrane	86.55	85.83
Bra007063.1-P	Field mustard	cytosol, plasma membrane	86.55	85.83
CDX73490	Canola	plasma membrane	86.55	85.48
GSMUA_Achr8P32930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	82.35	82.35
CDY13199	Canola	plasma membrane	65.97	78.89
KRG90750	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	82.35	77.47
Os08t0558600-01	Rice	extracellular	77.73	76.76
TraesCS7D01G278900.1	Wheat	plasma membrane, plastid	77.73	76.45
KXG25383	Sorghum	plastid	77.31	76.35
TraesCS7B01G181100.1	Wheat	cytosol, plastid	77.31	76.03
TraesCS7A01G279100.1	Wheat	cytosol, plastid	77.31	76.03
Zm00001d031942_P003	Maize	plastid	76.05	75.1
KRH33448	Soybean	extracellular, golgi	17.23	65.08
KRH46773	Soybean	endoplasmic reticulum	59.24	63.8
KRG99810	Soybean	endoplasmic reticulum	59.24	63.8
KRG89410	Soybean	cytosol	58.82	62.22
KRH50475	Soybean	endoplasmic reticulum	57.98	61.33
KRG90219	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	56.3	60.63
KRH36720	Soybean	endoplasmic reticulum	56.3	60.63
KRH11727	Soybean	cytosol	55.88	60.18
KRH12042	Soybean	cytosol	51.68	55.66
KRH37118	Soybean	cytosol	51.68	55.16
KRH50864	Soybean	cytosol	50.84	54.75
KRH02246	Soybean	cytosol	50.0	53.85
EES09956	Sorghum	cytosol, mitochondrion, nucleus, plastid	18.49	53.01
KRH33450	Soybean	cytosol	34.87	47.16
KRG99807	Soybean	cytosol	42.02	45.25
KRH57708	Soybean	plastid	18.07	36.44
KRH30399	Soybean	endoplasmic reticulum	33.19	35.91
KRH25265	Soybean	plasma membrane	33.19	35.91
KRH73537	Soybean	endoplasmic reticulum	31.93	34.7
KRH14588	Soybean	endoplasmic reticulum	31.93	34.7
KRH20159	Soybean	plastid	30.67	32.59
KRH03646	Soybean	plasma membrane	29.83	31.56

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100777402	MapMan:22.7.5.1	Gene3D:3.30.450.50	EMBL:ACUP02006718	EnsemblPlantsGene:GLYMA_10G278100
GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0006623	GO:GO:0006810
GO:GO:0006887	GO:GO:0006906	GO:GO:0007033	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	UniProt:I1LF04	InterPro:IPR001388
InterPro:IPR010908	EnsemblPlants:KRH36005	ProteinID:KRH36005	ProteinID:KRH36005.1	ProteinID:KRH36006.1	ProteinID:KRH36007.1
InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417
PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF169	SMART:SM01270	SUPFAM:SSF58038
SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI000233D248	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:50016450..50020441

Molecular Weight (calculated)

27187.9 Da

IEP (calculated)

6.034

GRAVY (calculated)

-0.194

Length

238 amino acids

Sequence
(BLAST)

001: MSQRGLIYSF VAKGTVVLAE HTQYTGNFST IAVQCLQKLP SNSSKYTYSC DGHTFNFLLD NGFVFLVVAD ESIGRSVPFV FLERVKDDFM KRYGASIKND
101: GAHPLADDED DDDLFEDRFS IAYNLDREFG PALKEHMQYC MNHPEEMSKL SKLKAQITEV KGIMMDNIEK VLDRGEKIEL LVDKTENLQF QADSFQRQGR
201: QLRRKMWLQN LQMKLMVGGG ILILIIILWV IACGGFKC

Best Arabidopsis Sequence Match ( AT3G54300.1 )
(BLAST)

001: MSQKGLIYSF VAKGTVVLAE HTPYSGNFST IAVQCLQKLP TNSSKYTYSC DGHTFNFLVD NGFVFLVVAD ESTGRSVPFV FLERVKEDFK KRYEASIKND
101: ERHPLADEDE DDDLFGDRFS VAYNLDREFG PILKEHMQYC MSHPEEMSKL SKLKAQITEV KGIMMDNIEK VLDRGEKIEL LVDKTENLQF QADSFQRQGR
201: QLRRKMWLQS LQMKLMVAGA VFSFILIVWV VACGGFKCSS

Arabidopsis Description

VAMP727Vesicle-associated membrane protein 727 [Source:UniProtKB/Swiss-Prot;Acc:Q9M376]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.