CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11727	Soybean	cytosol	99.09	99.09
VIT_01s0011g01660.t01	Wine grape	endoplasmic reticulum	88.69	88.69
KRG89410	Soybean	cytosol	90.05	88.44
KRH50475	Soybean	endoplasmic reticulum	89.14	87.56
Solyc02g069150.2.1	Tomato	nucleus	87.33	86.94
PGSC0003DMT400026763	Potato	cytosol	87.33	86.94
KRG99810	Soybean	endoplasmic reticulum	84.16	84.16
KRH46773	Soybean	endoplasmic reticulum	83.71	83.71
KRG90219	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	79.19	79.19
KRH33448	Soybean	extracellular, golgi	22.17	77.78
KRH50864	Soybean	cytosol	67.42	67.42
KRH12042	Soybean	cytosol	66.97	66.97
KRH02246	Soybean	cytosol	66.97	66.97
KRH37118	Soybean	cytosol	66.52	65.92
KRH33450	Soybean	cytosol	52.04	65.34
KRG99807	Soybean	cytosol	57.47	57.47
KRH36005	Soybean	endoplasmic reticulum	60.63	56.3
KRH57708	Soybean	plastid	29.41	55.08
KRG90750	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	52.94	46.25
KRH14588	Soybean	endoplasmic reticulum	39.37	39.73
KRH73537	Soybean	endoplasmic reticulum	39.37	39.73
KRH25265	Soybean	plasma membrane	34.84	35.0
KRH30399	Soybean	endoplasmic reticulum	34.39	34.55
KRH03646	Soybean	plasma membrane	32.58	32.0
KRH20159	Soybean	plastid	31.67	31.25

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100779673	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	ProteinID:ACJ61478.1
EMBL:ACUP02005388	EnsemblPlantsGene:GLYMA_09G019800	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	UniProt:I1L0A9	InterPro:IPR001388	InterPro:IPR010908
EnsemblPlants:KRH36720	ProteinID:KRH36720	ProteinID:KRH36720.1	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957
PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136
PANTHER:PTHR21136:SF92	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix
UniParc:UPI000233D4D4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:1540369..1547470

Molecular Weight (calculated)

24942.4 Da

IEP (calculated)

8.970

GRAVY (calculated)

-0.132

Length

221 amino acids

Sequence
(BLAST)

001: MGQKSLIYAF VSRGTVILAE YTEFSGNFNS IAFQCLQKLP ATNNKFTYNC DAHTFNYLVD NGYTYCVVAD ESIGRQLPMA FLERVKDEFV SKYGGGKAAT
101: APANSLNKEF GPKLREHMQY CVDHPEEISK LAKVKAQVSE VKGVMMENIE KVLDRGDKIE LLVDKTENLH NQAQDFRTSG TRIRRKMWLQ NMKIKLIVLG
201: ILIALILIIV LSVCRGFNCG K

Best Arabidopsis Sequence Match ( AT1G04760.2 )
(BLAST)

001: MGQQSLIYSF VARGTVILAE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLAD NGFTYCVVVI ESAGRQIPMA FLERVKEDFN KRYGGGKAST
101: AKANSLNKEF GSKLKEHMQY CADHPEEISK LSKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TKMKRKLWFE NMKIKLIVFG
201: IIVALILIII LSVCHGFKCT

Arabidopsis Description

VAMP726Putative vesicle-associated membrane protein 726 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAS5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.