Factsheet for VIT_01s0011g01660.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
nucleus 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11727	Soybean	cytosol	88.69	88.69
KRH36720	Soybean	endoplasmic reticulum	88.69	88.69
KRG89410	Soybean	cytosol	85.97	84.44
KRH50475	Soybean	endoplasmic reticulum	85.52	84.0
VIT_07s0005g05790.t01	Wine grape	cytosol, vacuole	82.81	83.56
PGSC0003DMT400026763	Potato	cytosol	83.71	83.33
Solyc02g069150.2.1	Tomato	nucleus	83.71	83.33
VIT_05s0136g00290.t01	Wine grape	extracellular	81.45	81.82
VIT_05s0020g01430.t01	Wine grape	cytosol	65.61	65.61
VIT_13s0101g00410.t01	Wine grape	endoplasmic reticulum, golgi	61.54	56.9
KRH57708	Soybean	plastid	27.6	51.69
VIT_04s0008g05650.t01	Wine grape	extracellular	38.46	38.64
VIT_06s0080g00800.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	35.75	35.91

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100259316	wikigene:100259316	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50
UniProt:A5BQJ0	EMBL:AM467632	ProteinID:CAN81365	ProteinID:CAN81365.1	ProteinID:CBI27181	ProteinID:CBI27181.3
EMBL:FN595752	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887
GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016192	GO:GO:0031201	InterPro:IPR001388	InterPro:IPR010908	EntrezGene:LOC100259316	wikigene:LOC100259316
InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	PFscan:PS50859
PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF171	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356
InterPro:Synaptobrevin	TIGR:TC52454	TIGR:TC63336	TMHMM:TMhelix	UniParc:UPI0001524911	ArrayExpress:VIT_01s0011g01660
EnsemblPlantsGene:VIT_01s0011g01660	EnsemblPlants:VIT_01s0011g01660.t01	unigene:Vvi.726	RefSeq:XP_002276767	RefSeq:XP_002276767.1	RefSeq:XP_002276786
RefSeq:XP_002276786.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:1500658..1504391

Molecular Weight (calculated)

24952.4 Da

IEP (calculated)

8.357

GRAVY (calculated)

-0.103

Length

221 amino acids

Sequence
(BLAST)

001: MGQKSLIYAF VARGTVILAE YTEFSGNFNS IAFQCLQKLP ATSNKFTYNC DAHTFTYLLD NGYTYCVVAD ESVGRQVPMA FLERIRDDFV ARYGGEKAAT
101: APANSLNKDF SSKLKEHMQY CVDHPEEISK LAKVKDQVSE VKGVMMENIE KVLDRGEKIE LLVDKTHNLH EQAQDFRSAG TKIRRKMWLQ NMKIKLIVLG
201: ILVALILIIV LSVCHGFNCG K

Best Arabidopsis Sequence Match ( AT1G04760.2 )
(BLAST)

001: MGQQSLIYSF VARGTVILAE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLAD NGFTYCVVVI ESAGRQIPMA FLERVKEDFN KRYGGGKAST
101: AKANSLNKEF GSKLKEHMQY CADHPEEISK LSKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TKMKRKLWFE NMKIKLIVFG
201: IIVALILIII LSVCHGFKCT

Arabidopsis Description

VAMP726Putative vesicle-associated membrane protein 726 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAS5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.