Factsheet for PGSC0003DMT400026763

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g069150.2.1	Tomato	nucleus	100.0	100.0
KRH36720	Soybean	endoplasmic reticulum	86.94	87.33
KRH11727	Soybean	cytosol	86.49	86.88
KRG89410	Soybean	cytosol	87.84	86.67
KRH50475	Soybean	endoplasmic reticulum	87.39	86.22
VIT_01s0011g01660.t01	Wine grape	endoplasmic reticulum	83.33	83.71
PGSC0003DMT400006104	Potato	cytosol, extracellular	82.88	83.64
PGSC0003DMT400051941	Potato	cytosol	81.53	82.27
PGSC0003DMT400076273	Potato	cytosol	79.28	79.64
PGSC0003DMT400061574	Potato	endoplasmic reticulum, mitochondrion, plasma membrane	60.81	56.25
PGSC0003DMT400029447	Potato	cytosol	63.96	47.97
KRH57708	Soybean	plastid	25.23	47.46
PGSC0003DMT400067225	Potato	mitochondrion	37.39	37.73
PGSC0003DMT400015063	Potato	plastid	33.33	32.46
PGSC0003DMT400043452	Potato	cytosol	48.65	29.27

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:102578726	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR001388
InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M1ANP9	PFAM:PF00957	PFAM:PF13774
EnsemblPlantsGene:PGSC0003DMG400010339	PGSC:PGSC0003DMG400010339	EnsemblPlants:PGSC0003DMT400026763	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859
PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF92	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356
InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI0002767EE0	RefSeq:XP_006362607.1	SEG:seg	:

Description

Vesicle-associated membrane protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010339]

Coordinates

chr2:+:28155854..28162046

Molecular Weight (calculated)

25031.5 Da

IEP (calculated)

8.765

GRAVY (calculated)

-0.181

Length

222 amino acids

Sequence
(BLAST)

001: MGQQKALIYA FVGRGNVILA EYTDFSGNFN SIAYQCLQKL PASNNKFTYN CDGHTFNYLV DNGFTYCVVA EESVGRQIPI AFLERIKDDF MSKYGSGKAA
101: TAPPNSLNKE FGPKLKEHMQ YCAEHPEEIS KLAKVKAQVS EVKGVMMENI EKVLDRGEKI ELLVDKTENL HHQAQDFRNT GTQIRRKMWL QNMKIKLIVL
201: GILIALILII VLSVCKGFNC GK

Best Arabidopsis Sequence Match ( AT2G33120.1 )
(BLAST)

001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE NGFTYCVVAV DSAGRQIPMA FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TQMRRKMWFQ NMKIKLIVLA
201: IIIALILIII LSICGGFNCG K

Arabidopsis Description

SAR1AT2G33120 protein [Source:UniProtKB/TrEMBL;Acc:B9DH97]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.