Factsheet for PGSC0003DMT400029447

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g066940.2.1	Tomato	cytosol	73.65	98.64
KRH12042	Soybean	cytosol	64.86	86.88
KRH50864	Soybean	cytosol	64.86	86.88
KRH02246	Soybean	cytosol	64.19	85.97
KRH37118	Soybean	cytosol	63.51	84.3
VIT_05s0020g01430.t01	Wine grape	cytosol	62.5	83.71
AT4G15780.1	Thale cress	cytosol	52.03	83.7
Bra033511.1-P	Field mustard	cytosol	62.16	82.88
CDY22900	Canola	cytosol, plasma membrane, plastid	61.82	82.43
CDY44179	Canola	cytosol	61.82	82.43
GSMUA_Achr9P30970_001	Banana	cytosol	56.08	72.81
PGSC0003DMT400051941	Potato	cytosol	53.04	71.36
PGSC0003DMT400006104	Potato	cytosol, extracellular	51.35	69.09
PGSC0003DMT400076273	Potato	cytosol	48.99	65.61
CDY22757	Canola	cytosol	44.59	65.35
Bra038066.1-P	Field mustard	cytosol	44.59	65.35
PGSC0003DMT400026763	Potato	cytosol	47.97	63.96
Os07t0249200-01	Rice	cytosol	51.01	60.89
KXG34786	Sorghum	cytosol	48.99	58.23
Zm00001d005468_P001	Maize	cytosol	48.65	56.92
TraesCS5A01G003100.1	Wheat	cytosol	44.59	56.9
TraesCS5D01G003800.1	Wheat	cytosol	43.92	56.28
Zm00001d019298_P002	Maize	cytosol	47.97	56.13
PGSC0003DMT400061574	Potato	endoplasmic reticulum, mitochondrion, plasma membrane	39.19	48.33
PGSC0003DMT400067225	Potato	mitochondrion	22.97	30.91
PGSC0003DMT400015063	Potato	plastid	21.28	27.63
PGSC0003DMT400043452	Potato	cytosol	28.38	22.76

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:102579175	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR001388
InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M1ASU4	PFAM:PF00957	PFAM:PF13774
EnsemblPlantsGene:PGSC0003DMG400011324	PGSC:PGSC0003DMG400011324	EnsemblPlants:PGSC0003DMT400029447	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859
PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF72	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356
InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI00029651F7	SEG:seg	:	:

Description

Vesicle-associated membrane protein 724 [Source:PGSC_GENE;Acc:PGSC0003DMG400011324]

Coordinates

chr1:+:58094077..58099444

Molecular Weight (calculated)

33682.1 Da

IEP (calculated)

9.231

GRAVY (calculated)

-0.170

Length

296 amino acids

Sequence
(BLAST)

001: MGQESFIYSF VARGTMVLAE YTEFTGNFPA IAAQCLQKLP SSNNKFTYNC DHHTFNFLVQ DGYAYCVVSK ESVGKQISIA FLERVRADFN KRYGGGKADT
101: AVAKSLNKEF GPIMKEHMQY IIDHADEIEK LLKVKAQVSE VKSIMLENID KISIAFLERV RADFNKRYGG GKADTAVAKS LNKEFGPIMK EHMQYIIDHA
201: DEIEKLLKVK AQVSEVKSIM LENIDKAIER GENLTILSGK TENLRDSALE FKTKGTQIRR KMWYQNMKIK LVVFGIILFL VLIIWLSICR GFNCTN

Best Arabidopsis Sequence Match ( AT4G15780.1 )
(BLAST)

001: MGQESFIYSF VARGTMILAE YTEFTGNFPS IAAQCLQKLP SSSNSKFTYN CDHHTFNFLV EDGYAYCVVA KDSLSKQISI AFLERVKADF KKRYGGGKAS
101: TAIAKSLNKE FGPVMKEHMN YIVDHAEEIE KLIKVKAQVS EVKSIMLENI DKAIDRGENL TVLTDKTENL RSQAREYKKT KGHR

Arabidopsis Description

ATVAMP724vesicle-associated membrane protein 724 [Source:TAIR;Acc:AT4G15780]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.