Factsheet for TraesCS5D01G003800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G003100.1	Wheat	cytosol	93.07	92.67
Os12t0639800-00	Rice	plasma membrane	74.89	79.0
KXG24150	Sorghum	cytosol	74.89	75.55
TraesCS5D01G459900.1	Wheat	vacuole	60.17	62.61
Solyc01g066940.2.1	Tomato	cytosol	56.28	58.82
KRH12042	Soybean	cytosol	56.28	58.82
KRH02246	Soybean	cytosol	55.84	58.37
KRH50864	Soybean	cytosol	55.84	58.37
VIT_05s0020g01430.t01	Wine grape	cytosol	54.98	57.47
KRH37118	Soybean	cytosol	55.41	57.4
AT4G15780.1	Thale cress	cytosol	45.02	56.52
Bra033511.1-P	Field mustard	cytosol	53.68	55.86
TraesCS4D01G280300.1	Wheat	cytosol	53.68	55.86
CDY44179	Canola	cytosol	53.68	55.86
CDY22900	Canola	cytosol, plasma membrane, plastid	53.25	55.41
GSMUA_Achr9P30970_001	Banana	cytosol	53.68	54.39
TraesCS7D01G278900.1	Wheat	plasma membrane, plastid	49.35	47.11
Zm00001d005468_P001	Maize	cytosol	51.52	47.04
Zm00001d019298_P002	Maize	cytosol	51.52	47.04
CDY22757	Canola	cytosol	40.26	46.04
Bra038066.1-P	Field mustard	cytosol	40.26	46.04
PGSC0003DMT400029447	Potato	cytosol	56.28	43.92
TraesCS7D01G136300.1	Wheat	endoplasmic reticulum, plasma membrane	33.77	35.29
TraesCS7D01G324800.1	Wheat	plasma membrane	31.6	32.88
TraesCS6D01G355800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	32.47	32.19

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR001388	InterPro:IPR010908
InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	PFscan:PS50859
PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF99	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356
InterPro:Synaptobrevin	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5D01G003800	EnsemblPlants:TraesCS5D01G003800.1	TIGR:cd15843	SEG:seg

Description

No Description!

Coordinates

chr5D:-:3555756..3557333

Molecular Weight (calculated)

25908.5 Da

IEP (calculated)

8.579

GRAVY (calculated)

-0.230

Length

231 amino acids

Sequence
(BLAST)

001: MARKGEGAGP NPPATTMIYA MVARGTLVVA EHTAYTGNFR DIAAQCLHKL PAGDSRFTYT CDGHTFTFLL HQGYAYCVVA TESAGREVPL AFLERIKEEF
101: NKRYAGGKAA TATANSLSKD FGPRLKEQMQ YCMDHPEEVS RLSKVQAQVS EVKGIMMENI DKVIDRGEQI DGLVTRTEQL HDHAMDFRTE GTRLRRRMWY
201: QNMKIKLIVA GIVVAIILII VLSICHRDHC K

Best Arabidopsis Sequence Match ( AT1G04750.1 )
(BLAST)

001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC

Arabidopsis Description

VAMP721Putative vesicle-associated membrane protein, synaptobrevin 7B [Source:UniProtKB/TrEMBL;Acc:Q681L9]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.