Factsheet for PGSC0003DMT400076273

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g091610.2.1	Tomato	plastid	97.74	97.74
KRH33448	Soybean	extracellular, golgi	23.98	84.13
PGSC0003DMT400006104	Potato	cytosol, extracellular	83.71	84.09
PGSC0003DMT400051941	Potato	cytosol	82.81	83.18
GSMUA_Achr6P04490_001	Banana	cytosol, extracellular	82.35	82.73
KRG90219	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	80.54	80.54
PGSC0003DMT400026763	Potato	cytosol	79.64	79.28
Zm00001d027808_P001	Maize	cytosol, mitochondrion	75.57	75.57
TraesCS4D01G280300.1	Wheat	cytosol	74.66	74.32
KXG40114	Sorghum	cytosol, vacuole	73.3	73.64
Os03t0165800-01	Rice	plasma membrane	72.85	72.2
TraesCS4A01G021800.2	Wheat	cytosol	74.66	64.96
TraesCS4B01G281700.1	Wheat	cytosol	74.66	64.96
KRH33450	Soybean	cytosol	51.13	64.2
PGSC0003DMT400061574	Potato	endoplasmic reticulum, mitochondrion, plasma membrane	60.18	55.42
PGSC0003DMT400029447	Potato	cytosol	65.61	48.99
Zm00001d048443_P002	Maize	peroxisome	65.61	46.77
PGSC0003DMT400067225	Potato	mitochondrion	36.65	36.82
PGSC0003DMT400015063	Potato	plastid	35.29	34.21
PGSC0003DMT400043452	Potato	cytosol	50.68	30.35

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:102583142	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	ncoils:Coil
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192
InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M1CWH3	PFAM:PF00957
PFAM:PF13774	EnsemblPlantsGene:PGSC0003DMG400029653	PGSC:PGSC0003DMG400029653	EnsemblPlants:PGSC0003DMT400076273	PRINTS:PR00219	ScanProsite:PS00417
PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF92	SMART:SM01270	SUPFAM:SSF58038
SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI00029528CB	RefSeq:XP_006360344.1	SEG:seg

Description

VAMP721 [Source:PGSC_GENE;Acc:PGSC0003DMG400029653]

Coordinates

chr9:-:58471267..58474299

Molecular Weight (calculated)

24918.6 Da

IEP (calculated)

9.531

GRAVY (calculated)

-0.135

Length

221 amino acids

Sequence
(BLAST)

001: MGQQTLIYSF VARGTVILAE YTEFTGNFNI IASQCLQKLP ASNNRFTYNC DGHTFNFLAE NGFTYCVVAT ESAGRQLPIA FLERIKDDFS KKYGGGKATT
101: AAPKSLSKEF GPKLKEHMKY CVDNPEEINK LAKVKAQVSE VKGVMMQNIE KVLDRGEKIE LLVDKTENLR SQAQDFRQQG TKIRRKLWYE NMKIKLIVLG
201: IIIALILIII LSVCPGFKCM S

Best Arabidopsis Sequence Match ( AT1G04760.2 )
(BLAST)

001: MGQQSLIYSF VARGTVILAE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLAD NGFTYCVVVI ESAGRQIPMA FLERVKEDFN KRYGGGKAST
101: AKANSLNKEF GSKLKEHMQY CADHPEEISK LSKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TKMKRKLWFE NMKIKLIVFG
201: IIVALILIII LSVCHGFKCT

Arabidopsis Description

VAMP726Putative vesicle-associated membrane protein 726 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAS5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.