Factsheet for Os03t0165800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	cytosol

plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027808_P001	Maize	cytosol, mitochondrion	88.79	89.59
KXG40114	Sorghum	cytosol, vacuole	87.44	88.64
TraesCS4D01G280300.1	Wheat	cytosol	85.65	86.04
TraesCS4B01G281700.1	Wheat	cytosol	85.65	75.2
TraesCS4A01G021800.2	Wheat	cytosol	85.65	75.2
PGSC0003DMT400076273	Potato	cytosol	72.2	72.85
Solyc09g091610.2.1	Tomato	plastid	72.2	72.85
Os07t0194000-01	Rice	plasma membrane	71.3	72.27
KRG90219	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	71.3	71.95
GSMUA_Achr6P04490_001	Banana	cytosol, extracellular	70.85	71.82
Os03t0803000-01	Rice	plasma membrane	69.06	70.0
Solyc12g098180.1.1	Tomato	cytosol, vacuole	69.06	69.68
KRH33448	Soybean	extracellular, golgi	17.94	63.49
Os12t0639800-00	Rice	plasma membrane	60.09	61.19
KRH33450	Soybean	cytosol	47.53	60.23
Zm00001d048443_P002	Maize	peroxisome	76.23	54.84
Os08t0558600-01	Rice	extracellular	55.16	51.04
Os07t0249200-01	Rice	cytosol	55.16	49.6
Os10t0154000-01	Rice	plasma membrane	36.77	36.28
Os06t0174400-01	Rice	plasma membrane	32.74	33.03
Os02t0803600-01	Rice	plasma membrane	32.74	32.3

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	EntrezGene:4331733	ProteinID:ABF94152.1
EMBL:AK069165	ProteinID:BAF10984.1	ProteinID:BAS82471.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	InterPro:IPR001388	InterPro:IPR010908
InterPro:Longin-like_dom_sf	InterPro:Longin_dom	EnsemblPlantsGene:Os03g0165800	EnsemblPlants:Os03t0165800-01	PFAM:PF00957	PFAM:PF13774
PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF109
UniProt:Q10RB1	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix
UniParc:UPI0000DB44CF	RefSeq:XP_015630002.1	SEG:seg	:	:	:

Description

Similar to Vesicle-associated membrane protein 725 (AtVAMP725). (Os03t0165800-01)

Coordinates

chr3:+:3551775..3554415

Molecular Weight (calculated)

25253.7 Da

IEP (calculated)

9.665

GRAVY (calculated)

-0.316

Length

223 amino acids

Sequence
(BLAST)

001: MAPQKRTTLV YSFVARGAVV LADHAEVSGN FASVAAQCLQ KLPSTNNRHS YNCDGHTFNY HVHDGFTYCV VATESAGRQL PVGFIERVKE DFSKKYSGGK
101: AKNATANSLK REYGPKLKEH MKYCDAHPEE IDKLAKVKAQ VTEVKGVMMQ NIEKVLDRGE KIELLVDKTE DLRSQAQDFR KAGTKIRRKM WWENMKMKLI
201: VFGIVVALIL VIILTVCRDL NCW

Best Arabidopsis Sequence Match ( AT1G04760.2 )
(BLAST)

001: MGQQSLIYSF VARGTVILAE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLAD NGFTYCVVVI ESAGRQIPMA FLERVKEDFN KRYGGGKAST
101: AKANSLNKEF GSKLKEHMQY CADHPEEISK LSKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TKMKRKLWFE NMKIKLIVFG
201: IIVALILIII LSVCHGFKCT

Arabidopsis Description

VAMP726Putative vesicle-associated membrane protein 726 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAS5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.