Factsheet for TraesCS4A01G021800.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G280300.1	Wheat	cytosol	87.4	100.0
TraesCS4B01G281700.1	Wheat	cytosol	99.61	99.61
KXG40114	Sorghum	cytosol, vacuole	74.8	86.36
Zm00001d027808_P001	Maize	cytosol, mitochondrion	74.8	85.97
Os03t0165800-01	Rice	plasma membrane	75.2	85.65
PGSC0003DMT400076273	Potato	cytosol	64.96	74.66
Solyc09g091610.2.1	Tomato	plastid	64.57	74.21
GSMUA_Achr6P04490_001	Banana	cytosol, extracellular	62.2	71.82
Solyc12g098180.1.1	Tomato	cytosol, vacuole	62.2	71.49
KRG90219	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	61.81	71.04
TraesCS5A01G449900.1	Wheat	unclear	61.02	69.51
KRH33448	Soybean	extracellular, golgi	15.35	61.9
KRH33450	Soybean	cytosol	41.73	60.23
Zm00001d048443_P002	Maize	peroxisome	66.14	54.19
TraesCS5A01G003100.1	Wheat	cytosol	49.21	53.88
TraesCS7A01G279100.1	Wheat	cytosol, plastid	48.03	50.41
TraesCS7A01G136300.1	Wheat	plasma membrane, plastid	31.1	35.75
TraesCS7A01G328000.1	Wheat	plasma membrane	31.1	35.59
TraesCS6A01G371800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	29.13	31.76

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR001388	InterPro:IPR010908
InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417
PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF109	SMART:SM01270	SUPFAM:SSF58038
SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4A01G021800	EnsemblPlants:TraesCS4A01G021800.2	TIGR:cd15843
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:15653049..15655025

Molecular Weight (calculated)

28887.4 Da

IEP (calculated)

9.105

GRAVY (calculated)

-0.217

Length

254 amino acids

Sequence
(BLAST)

001: MGPPPKKLVY SFVGRGTTVL ADHAEASGNF ASVAAQCLQK LPPNNNRLSY NCDGHTFNYH IHDGFTYCVV ATESAGRQLP IGFIERVKED FAKKYSGGKA
101: KTAGPNSLKR EFGPKLKEHM KYCDLHPEEI DKLAKVKAQV SEVKGVMMQN IEKVLDRGEK IELLVDKTED LRSQVSYTHT HLDSIFSFLC HHPRCMTYLV
201: IFACLQAQDF KKQGTKIRQK MWWENMKIKL IAFGIIVLLI LCIILTVCRD FKCW

Best Arabidopsis Sequence Match ( AT1G04750.1 )
(BLAST)

001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC

Arabidopsis Description

VAMP721Putative vesicle-associated membrane protein, synaptobrevin 7B [Source:UniProtKB/TrEMBL;Acc:Q681L9]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.