Factsheet for PGSC0003DMT400067225

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400038357
PGSC0003DMT400043211
PGSC0003DMT400045973
PGSC0003DMT400050219
PGSC0003DMT400068230
PGSC0003DMT400084469

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32150.1	PGSC0003DMT400050219	AT5G39510.1	24556609
AT4G32150.1	PGSC0003DMT400038357	AT5G46860.1	24556609
AT4G32150.1	PGSC0003DMT400043211	AT5G46860.1	24556609
AT4G32150.1	PGSC0003DMT400045973	AT5G46860.1	24556609
AT4G32150.1	PGSC0003DMT400068230	AT5G46860.1	24556609
AT4G32150.1	PGSC0003DMT400084469	AT5G46860.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g065950.2.1	Tomato	endoplasmic reticulum, nucleus	98.18	98.18
VIT_04s0008g05650.t01	Wine grape	extracellular	90.45	90.45
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	82.27	82.65
CDY61387	Canola	endoplasmic reticulum, plasma membrane	82.27	82.65
CDX75224	Canola	endoplasmic reticulum, plasma membrane	81.36	81.36
CDX68821	Canola	endoplasmic reticulum, plasma membrane	80.91	80.91
AT4G32150.1	Thale cress	golgi, plasma membrane	80.45	80.82
CDX69781	Canola	plasma membrane	80.0	79.64
AT2G25340.1	Thale cress	endoplasmic reticulum, plasma membrane	79.09	79.45
GSMUA_Achr6P35140_001	Banana	plasma membrane	79.09	79.09
CDX97084	Canola	plasma membrane	79.09	78.73
Bra008987.1-P	Field mustard	mitochondrion	78.64	78.28
GSMUA_Achr9P09180_001	Banana	endoplasmic reticulum, plasma membrane	78.18	78.18
OQU75937	Sorghum	plasma membrane	75.91	75.57
Os06t0174400-01	Rice	plasma membrane	74.55	74.21
AT5G11150.2	Thale cress	golgi, plasma membrane	75.91	73.89
TraesCS7B01G037300.1	Wheat	plasma membrane, plastid	72.73	72.4
TraesCS7A01G136300.1	Wheat	plasma membrane, plastid	72.73	72.4
TraesCS7D01G136300.1	Wheat	endoplasmic reticulum, plasma membrane	72.27	71.95
Os02t0803600-01	Rice	plasma membrane	69.55	67.7
KRH20159	Soybean	plastid	68.64	67.41
KRH03646	Soybean	plasma membrane	68.64	67.11
Zm00001d018408_P001	Maize	cytosol	68.18	66.37
EES05972	Sorghum	cytosol	68.18	65.79
Zm00001d037483_P002	Maize	plasma membrane	75.91	65.75
TraesCS6A01G371800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	68.64	64.81
TraesCS6D01G355800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	68.18	64.38
TraesCS6B01G409400.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	67.73	63.95
HORVU7Hr1G028250.1	Barley	peroxisome, plasma membrane	70.91	63.41
PGSC0003DMT400015063	Potato	plastid	50.91	49.12
Bra011325.1-P	Field mustard	endoplasmic reticulum	77.27	46.58
PGSC0003DMT400051941	Potato	cytosol	37.73	37.73
PGSC0003DMT400006104	Potato	cytosol, extracellular	37.73	37.73
PGSC0003DMT400026763	Potato	cytosol	37.73	37.39
PGSC0003DMT400076273	Potato	cytosol	36.82	36.65
PGSC0003DMT400061574	Potato	endoplasmic reticulum, mitochondrion, plasma membrane	37.27	34.17
PGSC0003DMT400029447	Potato	cytosol	30.91	22.97
PGSC0003DMT400043452	Potato	cytosol	25.91	15.45

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:102583642	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR001388	InterPro:IPR010908
InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M1CGX3	PFAM:PF00957	PFAM:PF13774	EnsemblPlantsGene:PGSC0003DMG400026142
PGSC:PGSC0003DMG400026142	EnsemblPlants:PGSC0003DMT400067225	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892
PANTHER:PTHR21136	PANTHER:PTHR21136:SF104	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	SignalP:SignalP-noTM
InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI0002961687	RefSeq:XP_006353677.1	SEG:seg	:

Description

Vesicle-associated membrane protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026142]

Coordinates

chr6:+:45781433..45784749

Molecular Weight (calculated)

25119.4 Da

IEP (calculated)

9.761

GRAVY (calculated)

-0.132

Length

220 amino acids

Sequence
(BLAST)

001: MTILYALVAR GSVVLAEQSG TSTNASTIAR QILEKIPGNN DSNASYSQDR YIFHVKRTDG LTVLCMADDN AGRRIPFAFL EEIHQRFVRT YGRAVLSAQA
101: YGMNDEFSRV LSQQMEYYSS DPNADRINRL KGEMSQVRTV MVENIDKVLE RGDRLELLVD KTANMQENTF RFRKQARRFR STVWWRNVKL TVALIVLLLV
201: IVYVILAFAC HGLTLPTCLK

Best Arabidopsis Sequence Match ( AT4G32150.1 )
(BLAST)

001: MAILYALVAR GTVVLSEFTA TSTNASTIAK QILEKVPGDN DSNVSYSQDR YVFHVKRTDG LTVLCMAEET AGRRIPFAFL EDIHQRFVRT YGRAVHTALA
101: YAMNEEFSRV LSQQIDYYSN DPNADRINRI KGEMNQVRGV MIENIDKVLD RGERLELLVD KTANMQGNTF RFRKQARRFR SNVWWRNCKL TVLLILLLLV
201: IIYIAVAFLC HGPTLPSCI

Arabidopsis Description

VAMP711Vesicle-associated membrane protein 711 [Source:UniProtKB/Swiss-Prot;Acc:O49377]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.