CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
nucleus 2
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89410	Soybean	cytosol	98.22	98.22
KRH11727	Soybean	cytosol	87.56	89.14
KRH36720	Soybean	endoplasmic reticulum	87.56	89.14
Solyc02g069150.2.1	Tomato	nucleus	86.22	87.39
PGSC0003DMT400026763	Potato	cytosol	86.22	87.39
VIT_01s0011g01660.t01	Wine grape	endoplasmic reticulum	84.0	85.52
KRG99810	Soybean	endoplasmic reticulum	82.22	83.71
KRH46773	Soybean	endoplasmic reticulum	82.22	83.71
KRH33448	Soybean	extracellular, golgi	21.78	77.78
KRG90219	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	75.56	76.92
KRH50864	Soybean	cytosol	64.89	66.06
KRH12042	Soybean	cytosol	64.44	65.61
KRH02246	Soybean	cytosol	64.44	65.61
KRH37118	Soybean	cytosol	64.44	65.02
KRH33450	Soybean	cytosol	49.33	63.07
KRG99807	Soybean	cytosol	57.33	58.37
KRH36005	Soybean	endoplasmic reticulum	61.33	57.98
KRH57708	Soybean	plastid	25.78	49.15
KRG90750	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	54.22	48.22
KRH14588	Soybean	endoplasmic reticulum	36.44	37.44
KRH73537	Soybean	endoplasmic reticulum	36.44	37.44
KRH25265	Soybean	plasma membrane	32.0	32.73
KRH30399	Soybean	endoplasmic reticulum	31.56	32.27
KRH03646	Soybean	plasma membrane	29.78	29.78
KRH20159	Soybean	plastid	28.89	29.02

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100799609	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	EMBL:ACUP02004693
EnsemblPlantsGene:GLYMA_07G223000	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887
GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016192	GO:GO:0031201	UniProt:I1KMA2	InterPro:IPR001388	InterPro:IPR010908	EnsemblPlants:KRH50475
ProteinID:KRH50475	ProteinID:KRH50475.1	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774
PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF171
SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI0002338501
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:39905172..39909966

Molecular Weight (calculated)

25467.9 Da

IEP (calculated)

8.357

GRAVY (calculated)

-0.189

Length

225 amino acids

Sequence
(BLAST)

001: MGQDQNQRSL IYAFVSRGTV ILAEYTEFSG NFNTIAFQCL QKLPASNNKF TYNCDGHTFN YLVDNEFTYC VVADESIGRQ VPVAFLERAK DDFVAKYGGG
101: KATTAAANSL NKEFGSKLKE HMQYCVEHPE EISKLAKVKA QVSEVKDVMM ENIEKVLDRG EKIELLVDKT ENLHHQAQDF RNSGTKIRRK MWLQNMKIKL
201: IVLAILIALI LIIVLSVCRG FNCGK

Best Arabidopsis Sequence Match ( AT1G04750.1 )
(BLAST)

001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC

Arabidopsis Description

VAMP721Putative vesicle-associated membrane protein, synaptobrevin 7B [Source:UniProtKB/TrEMBL;Acc:Q681L9]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.