CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99810	Soybean	endoplasmic reticulum	98.64	98.64
KRH33448	Soybean	extracellular, golgi	23.98	84.13
KRH36720	Soybean	endoplasmic reticulum	83.71	83.71
KRH11727	Soybean	cytosol	83.26	83.26
KRG89410	Soybean	cytosol	84.16	82.67
KRG90219	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	82.35	82.35
KRH50475	Soybean	endoplasmic reticulum	83.71	82.22
KRH12042	Soybean	cytosol	71.04	71.04
KRH50864	Soybean	cytosol	70.14	70.14
KRH37118	Soybean	cytosol	70.59	69.96
KRH02246	Soybean	cytosol	69.23	69.23
KRH33450	Soybean	cytosol	54.3	68.18
KRG99807	Soybean	cytosol	60.18	60.18
KRH36005	Soybean	endoplasmic reticulum	63.8	59.24
KRG90750	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	55.66	48.62
KRH57708	Soybean	plastid	24.89	46.61
KRH73537	Soybean	endoplasmic reticulum	38.91	39.27
KRH14588	Soybean	endoplasmic reticulum	38.91	39.27
KRH25265	Soybean	plasma membrane	38.01	38.18
KRH30399	Soybean	endoplasmic reticulum	37.56	37.73
KRH03646	Soybean	plasma membrane	33.94	33.33
KRH20159	Soybean	plastid	32.58	32.14

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100789613	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	EMBL:ACUP02005357
ncoils:Coil	EnsemblPlantsGene:GLYMA_08G355600	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	UniProt:I1KZB1	InterPro:IPR001388	InterPro:IPR010908
EnsemblPlants:KRH46773	ProteinID:KRH46773	ProteinID:KRH46773.1	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957
PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136
PANTHER:PTHR21136:SF92	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix
UniParc:UPI0002337CBC	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:46827580..46830986

Molecular Weight (calculated)

24750.2 Da

IEP (calculated)

9.185

GRAVY (calculated)

-0.097

Length

221 amino acids

Sequence
(BLAST)

001: MGQQSLIYSF VARGTVILAE YTEFTGNFTG VAAQCLQKLP SSNNKFTYNC DGHTFNYLVD NGFTYCVVAV ESAGRQIPIA FLERIKEDFT KKYAGGKAAT
101: AAAQSLNREF GPKLKEQMQY CVDHPEEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRQQG TKIRRKMWFQ NMKIKLIVLG
201: IIIALILIIV LSVCGGFNCG K

Best Arabidopsis Sequence Match ( AT2G32670.1 )
(BLAST)

001: MDRSVVPISL APFQFLLVFW IFLTSVHTNP NKQQKTVVSL SLWWNSKNRI RGCVWFFFLL RVTRTMGQQN LIYSFVARGT VILVEYTEFK GNFTAVAAQC
101: LQKLPSSNNK FTYNCDGHTF NYLVENGFTY CVVAVESVGR QIPMAFLERV KEDFNKRYGG GKATTAQANS LNREFGSKLK EHMQYCVDHP DEISKLAKVK
201: AQVTEVKGVM MENIEKVLDR GEKIELLVDK TENLRSQAQD FRTQGTKIRR KMWFENMKIK LIVLGIIITL ILIIILSVCG GFKCT

Arabidopsis Description

VAMP725Vesicle-associated membrane protein 725 [Source:UniProtKB/Swiss-Prot;Acc:O48850]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.