CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67539
CDX68821
CDX70720
CDX73599
CDX75224
CDX77702
CDX78128
CDX78712
CDX84933
CDX89333
CDX94330
CDY03907
CDY13344
CDY15722
CDY27605
CDY33485
CDY37158
CDY43620
CDY61387

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39510.1	CDX84933	AT1G27300.1	21798944
AT5G39510.1	CDY03907	AT1G27300.1	21798944
AT5G39510.1	CDY15722	AT1G27300.1	21798944
AT5G39510.1	CDY27605	AT1G27300.1	21798944
AT5G39510.1	CDX67539	AT3G52850.1	10397763
AT5G39510.1	CDX73599	AT3G52850.1	10397763
AT5G39510.1	CDX78128	AT3G52850.1	10397763
AT5G39510.1	CDY13344	AT3G52850.1	10397763
AT5G39510.1	CDX89333	AT4G26455.1	21798944
AT5G39510.1	CDX94330	AT4G26455.1	21798944
AT5G39510.1	CDX68821	AT4G32150.1	24556575
AT5G39510.1	CDX75224	AT4G32150.1	24556575
AT5G39510.1	CDY61387	AT4G32150.1	24556575
AT5G39510.1	CDX70720	AT5G16830.1	10397763
AT5G39510.1	CDX78712	AT5G16830.1	10397763
AT5G39510.1	CDX77702	AT5G46860.1	12815100
AT5G39510.1	CDY33485	AT5G46860.1	12815100
AT5G39510.1	CDY37158	AT5G46860.1	12815100
AT5G39510.1	CDY43620	AT5G46860.1	12815100

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74445	Canola	cytosol, golgi, mitochondrion, nucleus, plastid	96.74	96.74
CDY30250	Canola	cytosol, golgi, nucleus	67.39	28.05
CDX74451	Canola	cytosol, golgi, nucleus	66.3	27.6
CDY37005	Canola	cytosol, golgi, nucleus	63.04	26.24
CDY00099	Canola	cytosol	58.7	24.43
CDY19995	Canola	cytosol	58.7	24.43
AT5G39510.1	Thale cress	cytosol, golgi, nucleus	57.61	23.98
VIT_14s0108g01200.t01	Wine grape	cytosol	50.0	20.81
KRG93576	Soybean	cytosol	47.83	19.91
KRH18448	Soybean	endoplasmic reticulum	47.83	19.91
PGSC0003DMT400050219	Potato	cytosol	47.83	19.91
Solyc03g115760.2.1	Tomato	nucleus, plastid	47.83	19.91
CDX79270	Canola	cytosol	23.91	17.05
CDY28553	Canola	cytosol	40.22	16.67
KRH40042	Soybean	cytosol	40.22	16.3
CDY44068	Canola	cytosol	39.13	16.22
CDY42125	Canola	mitochondrion	5.43	3.6

Protein Annotations

EnsemblPlants:CDX95233	EnsemblPlantsGene:GSBRNA2T00100844001	Gene3D:1.20.5.110	GO:A0A078E786	PANTHER:PTHR21230	PANTHER:PTHR21230:SF52
ProteinID:CDX95233	ProteinID:CDX95233.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDE832	MapMan:35.2

Description

BnaC09g16370D

Coordinates

chrLK031887:+:613954..614339

Molecular Weight (calculated)

10244.7 Da

IEP (calculated)

11.835

GRAVY (calculated)

-0.233

Length

92 amino acids

Sequence
(BLAST)

1: MRSADRLGRT TDRIKRLKSL ASQSSKTCTV RDSLPLLRTG DTLSGVDDNV GKSKKTLTGM TRRMNRNKWT IGAIITALVA AIILIFYFKL TK

Best Arabidopsis Sequence Match ( AT3G29100.2 )
(BLAST)

001: MDLEARNLPP NVKSSLLVKL REYKSDLNNF KTEVKRITSG NLNATARDEL LEAGMADTLT ASADQRSRLM MSTDHLGRTT DRIKDSRRTI LETEELGVSI
101: LQDLHGQRQS LLRAHETLHG VDDNVGKSKK ILTTMTRRMN RNKWTIGAII TVLVLAIIFI LYFKLTR

Arabidopsis Description

VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.