Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28553 | Canola | cytosol | 99.1 | 99.1 |
| Bra041108.1-P | Field mustard | cytosol | 100.0 | 88.8 |
| Solyc05g013050.2.1 | Tomato | cytosol | 72.97 | 73.3 |
| PGSC0003DMT400072860 | Potato | cytosol | 72.52 | 72.85 |
| VIT_01s0113g00540.t01 | Wine grape | cytosol | 72.07 | 72.73 |
| KRH74936 | Soybean | endoplasmic reticulum | 70.72 | 70.72 |
| KRH70794 | Soybean | endoplasmic reticulum | 70.27 | 70.27 |
| CDX79270 | Canola | cytosol | 39.64 | 68.22 |
| CDY19995 | Canola | cytosol | 61.71 | 61.99 |
| CDY00099 | Canola | cytosol | 61.26 | 61.54 |
| CDY37005 | Canola | cytosol, golgi, nucleus | 59.46 | 59.73 |
| CDY30250 | Canola | cytosol, golgi, nucleus | 58.56 | 58.82 |
| CDX74451 | Canola | cytosol, golgi, nucleus | 58.11 | 58.37 |
| CDY42125 | Canola | mitochondrion | 36.49 | 58.27 |
| CDX74445 | Canola | cytosol, golgi, mitochondrion, nucleus, plastid | 16.67 | 40.22 |
| CDX95233 | Canola | mitochondrion | 16.22 | 39.13 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.400 | MapMan:22.7.2.1 | GO:A0A078I4M0 | UniProt:A0A078I4M0 | EnsemblPlants:CDY44068 |
| ProteinID:CDY44068 | ProteinID:CDY44068.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 | InterPro:GOSR2/Membrin/Bos1 | EnsemblPlantsGene:GSBRNA2T00079486001 | InterPro:IPR038407 |
| PFAM:PF05008 | PFAM:PF12352 | PIRSF:PIRSF028865 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF52 | InterPro:SNARE |
| SUPFAM:SSF47661 | SUPFAM:SSF58038 | TMHMM:TMhelix | UniParc:UPI0004EDAE19 | InterPro:Vesicle_trsprt_v-SNARE_N | SEG:seg |
| InterPro:v-SNARE_N_sf | : | : | : | : | : |
Description
BnaA02g14320DBnaA02g14320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4M0]
Coordinates
chrLK032578:+:39526..41047
Molecular Weight (calculated)
25130.3 Da
IEP (calculated)
9.109
GRAVY (calculated)
-0.487
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDVFEGYER QYCELSTNLT RKSNSASLLP HGDDKKGKLG EIKSGIDEAD VLIRKMDLEA RSLQPSAKAT CLAKLREYKS DLNQLKKEFK RVSSPDVNQS
101: AREELMESGM ADPLSVSADQ RERLAMSVER LDQSSDRIRE SRRTMMETEE LGVSILQDLS QQRQTLLHSH SKLHGVDEAI DKSKKVLTAM SRRITRNKWI
201: VTSVIIALIL AIILIISFKL SH
101: AREELMESGM ADPLSVSADQ RERLAMSVER LDQSSDRIRE SRRTMMETEE LGVSILQDLS QQRQTLLHSH SKLHGVDEAI DKSKKVLTAM SRRITRNKWI
201: VTSVIIALIL AIILIISFKL SH
001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
Arabidopsis Description
VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [cytosol,nucleus,golgi]
SUBAcon: [cytosol,nucleus,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.