Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- cytosol 2
- vacuole 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44068 | Canola | cytosol | 88.8 | 100.0 |
| Solyc05g013050.2.1 | Tomato | cytosol | 64.8 | 73.3 |
| PGSC0003DMT400072860 | Potato | cytosol | 64.4 | 72.85 |
| VIT_01s0113g00540.t01 | Wine grape | cytosol | 64.0 | 72.73 |
| KRH74936 | Soybean | endoplasmic reticulum | 62.8 | 70.72 |
| KRH70794 | Soybean | endoplasmic reticulum | 62.4 | 70.27 |
| Bra036218.1-P | Field mustard | cytosol | 54.8 | 61.99 |
| Bra040987.1-P | Field mustard | cytosol, golgi, nucleus | 51.6 | 58.37 |
| Bra025661.1-P | Field mustard | cytosol, golgi, mitochondrion, nucleus, plastid | 14.8 | 40.22 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.400 | MapMan:22.7.2.1 | EnsemblPlantsGene:Bra041108 | EnsemblPlants:Bra041108.1 | EnsemblPlants:Bra041108.1-P |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 |
| GO:GO:0061025 | InterPro:GOSR2/Membrin/Bos1 | InterPro:IPR038407 | UniProt:M4FJ28 | PFAM:PF05008 | PFAM:PF12352 |
| PIRSF:PIRSF028865 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF52 | InterPro:SNARE | SUPFAM:SSF47661 | SUPFAM:SSF58038 |
| TMHMM:TMhelix | UniParc:UPI000253ECC7 | InterPro:Vesicle_trsprt_v-SNARE_N | SEG:seg | InterPro:v-SNARE_N_sf | : |
Description
AT1G26670 (E=8e-049) VTI12, ATVTI12, VTI1B | VTI1B; SNARE binding / receptor/ soluble NSF attachment protein
Coordinates
chrScaffold000561:-:228..1317
Molecular Weight (calculated)
28404.3 Da
IEP (calculated)
7.623
GRAVY (calculated)
-0.361
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDVFEGYER QYCELSTNLT RKSNSASLLP HGDDKKGKLG EIKSGIDEAD VLIRKMDLEA RSLQPSAKAT CLAKLREYKS DLNQLKKEFK RVSSPDVNQS
101: AREELMESGM ADPLSVYIDP LLPFFVSSLY AEESKLELVF PFQVSADQRE RLAMSVERLD QSSDRIRESR RTMMETEELG VSILQDLSQQ RQTLLHSHSK
201: LHGVDEAIDK SKKVLTAMSR RITRNKWIVT SVIIALILAI ILIISFKLSH
101: AREELMESGM ADPLSVYIDP LLPFFVSSLY AEESKLELVF PFQVSADQRE RLAMSVERLD QSSDRIRESR RTMMETEELG VSILQDLSQQ RQTLLHSHSK
201: LHGVDEAIDK SKKVLTAMSR RITRNKWIVT SVIIALILAI ILIISFKLSH
001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
Arabidopsis Description
VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [golgi,nucleus,cytosol]
SUBAcon: [golgi,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.