Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42125 | Canola | mitochondrion | 51.16 | 47.48 |
| AT1G26670.1 | Thale cress | cytosol, golgi, nucleus | 69.77 | 40.54 |
| CDY44068 | Canola | cytosol | 68.22 | 39.64 |
| CDY28553 | Canola | cytosol | 67.44 | 39.19 |
| VIT_01s0113g00540.t01 | Wine grape | cytosol | 58.14 | 34.09 |
| KRH70794 | Soybean | endoplasmic reticulum | 57.36 | 33.33 |
| KRH74936 | Soybean | endoplasmic reticulum | 57.36 | 33.33 |
| Solyc05g013050.2.1 | Tomato | cytosol | 55.81 | 32.58 |
| PGSC0003DMT400072860 | Potato | cytosol | 55.04 | 32.13 |
| CDY00099 | Canola | cytosol | 48.84 | 28.51 |
| CDY19995 | Canola | cytosol | 48.84 | 28.51 |
| CDY37005 | Canola | cytosol, golgi, nucleus | 44.96 | 26.24 |
| CDX74451 | Canola | cytosol, golgi, nucleus | 44.19 | 25.79 |
| CDY30250 | Canola | cytosol, golgi, nucleus | 44.19 | 25.79 |
| CDX74445 | Canola | cytosol, golgi, mitochondrion, nucleus, plastid | 17.05 | 23.91 |
| CDX95233 | Canola | mitochondrion | 17.05 | 23.91 |
Protein Annotations
| EnsemblPlants:CDX79270 | EnsemblPlantsGene:GSBRNA2T00131914001 | Gene3D:1.20.5.110 | Gene3D:1.20.58.400 | GO:A0A078CQY0 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | InterPro:IPR038407 |
| InterPro:SNARE | InterPro:Vesicle_trsprt_v-SNARE_N | InterPro:v-SNARE_N_sf | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF31 | PFAM:PF05008 |
| ProteinID:CDX79270 | ProteinID:CDX79270.1 | SUPFAM:SSF47661 | UniParc:UPI0004EB412D | MapMan:22.7.2.1 | : |
Description
BnaC06g20330D
Coordinates
chrLK031817:+:914892..915498
Molecular Weight (calculated)
14838.0 Da
IEP (calculated)
9.778
GRAVY (calculated)
-0.521
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLEARSLQP SAKALCLSKL REYKSDLNQL KKDFKRVSSP YANQSTCEEL MEPGMADVHA MPESLHYCCP SRNQLIRWEI SSVVEILSQQ RQTLLYAHTK
101: GLNDAIDKSK KVLTAMSRRI RRNKWIVGL
101: GLNDAIDKSK KVLTAMSRRI RRNKWIVGL
001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
Arabidopsis Description
VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [golgi,nucleus,cytosol]
SUBAcon: [golgi,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.