Factsheet for Bra021804.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48531	Canola	cytosol	98.64	98.64
CDY19154	Canola	cytosol	98.64	98.64
Bra022893.1-P	Field mustard	cytosol	95.45	95.45
Bra005568.1-P	Field mustard	cytosol	93.64	93.64
AT1G04760.2	Thale cress	cytosol	88.18	88.18
Os07t0194000-01	Rice	plasma membrane	85.91	85.91
VIT_05s0136g00290.t01	Wine grape	extracellular	85.45	85.45
Bra015345.1-P	Field mustard	endoplasmic reticulum	85.45	85.45
GSMUA_Achr4P22260_001	Banana	cytosol, extracellular	85.0	85.39
Bra022926.1-P	Field mustard	endoplasmic reticulum	85.91	85.14
GSMUA_Achr8P15290_001	Banana	cytosol, endoplasmic reticulum	84.55	84.93
GSMUA_Achr7P01760_001	Banana	plasma membrane	84.55	84.93
Bra005523.1-P	Field mustard	cytosol, extracellular	85.45	84.3
Zm00001d007767_P001	Maize	extracellular	85.0	84.23
EER96027	Sorghum	extracellular	85.0	84.23
Bra032493.1-P	Field mustard	cytosol	84.09	84.09
OQU90815	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.64	83.64
GSMUA_Achr9P25440_001	Banana	cytosol, vacuole	83.18	83.56
GSMUA_Achr9P11030_001	Banana	cytosol	83.18	83.56
Os03t0803000-01	Rice	plasma membrane	83.18	83.18
Bra030588.1-P	Field mustard	endoplasmic reticulum	82.73	83.11
GSMUA_Achr2P17740_001	Banana	cytosol	82.27	82.65
TraesCS5D01G459900.1	Wheat	vacuole	81.82	81.08
TraesCS5B01G457700.1	Wheat	vacuole	81.82	81.08
TraesCS5A01G449900.1	Wheat	unclear	81.82	80.72
HORVU5Hr1G107510.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.82	80.72
Bra021828.1-P	Field mustard	endoplasmic reticulum, extracellular	77.73	78.08
AT2G32670.1	Thale cress	endoplasmic reticulum, golgi	92.27	71.23
Zm00001d013055_P002	Maize	extracellular, plasma membrane	75.91	70.76
Zm00001d019091_P002	Maize	vacuole	83.64	70.5
Bra033511.1-P	Field mustard	cytosol	69.09	68.47
GSMUA_Achr8P03260_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	66.36	66.36
Bra003177.1-P	Field mustard	cytosol	60.0	54.77
Bra014823.1-P	Field mustard	golgi	59.55	54.13
Bra007063.1-P	Field mustard	cytosol, plasma membrane	58.64	53.75
Bra038066.1-P	Field mustard	cytosol	48.18	52.48
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	36.36	36.53
Bra008987.1-P	Field mustard	mitochondrion	36.36	36.2
Bra006623.1-P	Field mustard	endoplasmic reticulum, plasma membrane	35.91	35.75
Bra020187.1-P	Field mustard	endoplasmic reticulum	35.45	35.29
TraesCS3B01G193500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	70.0	34.38
PGSC0003DMT400043452	Potato	cytosol	50.91	30.35
Bra011325.1-P	Field mustard	endoplasmic reticulum	33.64	20.27
Solyc12g098170.1.1	Tomato	cytosol	17.27	12.46

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	EnsemblPlantsGene:Bra021804	EnsemblPlants:Bra021804.1
EnsemblPlants:Bra021804.1-P	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M4DZ57
PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892
PANTHER:PTHR21136	PANTHER:PTHR21136:SF120	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin
TMHMM:TMhelix	UniParc:UPI00025450F9	SEG:seg	:	:	:

Description

AT2G32670 (E=8e-106) ATVAMP725, VAMP725 | ATVAMP725

Coordinates

chrA04:+:14607107..14608639

Molecular Weight (calculated)

24954.6 Da

IEP (calculated)

9.358

GRAVY (calculated)

-0.185

Length

220 amino acids

Sequence
(BLAST)

001: MGQKNLIYSF VGRGTVILVE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLVE NGFTYCVVAV EAVGRQIPMA FLERVKEDFS KRYGGGKATT
101: AKPNSLNKEF GSKLKEHMQY CVDHPEEINK LAKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTEDLR SHAQDFRTQG TKIRRKMWWE NMKIKLIVAG
201: IIIALILIII ISVCPGFKCT

Best Arabidopsis Sequence Match ( AT2G32670.1 )
(BLAST)

001: MDRSVVPISL APFQFLLVFW IFLTSVHTNP NKQQKTVVSL SLWWNSKNRI RGCVWFFFLL RVTRTMGQQN LIYSFVARGT VILVEYTEFK GNFTAVAAQC
101: LQKLPSSNNK FTYNCDGHTF NYLVENGFTY CVVAVESVGR QIPMAFLERV KEDFNKRYGG GKATTAQANS LNREFGSKLK EHMQYCVDHP DEISKLAKVK
201: AQVTEVKGVM MENIEKVLDR GEKIELLVDK TENLRSQAQD FRTQGTKIRR KMWFENMKIK LIVLGIIITL ILIIILSVCG GFKCT

Arabidopsis Description

VAMP725Vesicle-associated membrane protein 725 [Source:UniProtKB/Swiss-Prot;Acc:O48850]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.