Factsheet for TraesCS3B01G193500.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, plastid, secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G457700.1	Wheat	vacuole	40.4	81.53
TraesCS5D01G459900.1	Wheat	vacuole	40.4	81.53
TraesCS5A01G449900.1	Wheat	unclear	40.4	81.17
HORVU5Hr1G107510.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	40.4	81.17
Os03t0803000-01	Rice	plasma membrane	38.17	77.73
OQU90815	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.95	77.27
GSMUA_Achr9P25440_001	Banana	cytosol, vacuole	36.38	74.43
GSMUA_Achr8P15290_001	Banana	cytosol, endoplasmic reticulum	36.16	73.97
VIT_05s0136g00290.t01	Wine grape	extracellular	36.16	73.64
GSMUA_Achr4P22260_001	Banana	cytosol, extracellular	35.71	73.06
GSMUA_Achr9P11030_001	Banana	cytosol	35.71	73.06
GSMUA_Achr7P01760_001	Banana	plasma membrane	35.49	72.6
Bra022893.1-P	Field mustard	cytosol	35.49	72.27
CDX84731	Canola	cytosol	35.49	72.27
CDY12188	Canola	cytosol	34.82	70.91
Bra005568.1-P	Field mustard	cytosol	34.82	70.91
CDY15521	Canola	endoplasmic reticulum	34.6	70.78
CDX86608	Canola	endoplasmic reticulum	34.38	70.32
CDY59643	Canola	extracellular	11.61	70.27
Bra021804.1-P	Field mustard	cytosol	34.38	70.0
CDY19154	Canola	cytosol	34.38	70.0
CDY18254	Canola	endoplasmic reticulum	34.38	70.0
Bra015345.1-P	Field mustard	endoplasmic reticulum	34.38	70.0
CDX89793	Canola	endoplasmic reticulum	34.38	70.0
CDY19450	Canola	cytosol, extracellular	34.82	69.96
Bra005523.1-P	Field mustard	cytosol, extracellular	34.6	69.51
CDY17139	Canola	cytosol, extracellular	34.6	69.51
CDX79510	Canola	endoplasmic reticulum	34.38	69.37
Bra032493.1-P	Field mustard	cytosol	33.93	69.09
Bra030588.1-P	Field mustard	endoplasmic reticulum	33.71	68.95
CDX84702	Canola	endoplasmic reticulum	34.15	68.92
Bra022926.1-P	Field mustard	endoplasmic reticulum	34.15	68.92
CDY10053	Canola	endoplasmic reticulum	33.71	68.64
CDY06150	Canola	cytosol	33.71	68.64
CDY48531	Canola	cytosol	33.71	68.64
Zm00001d013055_P002	Maize	extracellular, plasma membrane	35.27	66.95
CDX79466	Canola	endoplasmic reticulum	25.45	64.77
Bra021828.1-P	Field mustard	endoplasmic reticulum, extracellular	31.03	63.47
CDY37751	Canola	endoplasmic reticulum, extracellular, plasma membrane	31.03	63.47
CDY19156	Canola	cytosol	19.87	61.81
CDX79465	Canola	extracellular	11.83	61.63
CDY59642	Canola	endoplasmic reticulum	24.11	60.67
GSMUA_Achr8P03260_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	29.46	60.0
CDY23768	Canola	endoplasmic reticulum, extracellular, plasma membrane	21.21	56.89
CDY23767	Canola	extracellular	12.5	52.34
TraesCS4B01G281700.1	Wheat	cytosol	29.46	51.97
TraesCS7B01G181100.1	Wheat	cytosol, plastid	26.79	49.59
AT3G24890.2	Thale cress	cytosol	11.16	40.32
TraesCS7B01G228700.1	Wheat	plasma membrane	16.52	33.33
TraesCS7B01G037300.1	Wheat	plasma membrane, plastid	15.85	32.13
TraesCS6B01G409400.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	15.85	30.47
PGSC0003DMT400043452	Potato	cytosol	24.78	30.08
Solyc12g098170.1.1	Tomato	cytosol	7.14	10.49

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	Gene3D:3.90.70.10	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR001388
InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219
PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF120	InterPro:Papain_like_cys_pep_sf	SMART:SM01270
SUPFAM:SSF54001	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	EnsemblPlantsGene:TraesCS3B01G193500	EnsemblPlants:TraesCS3B01G193500.1
TIGR:cd15843	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:212884343..212889156

Molecular Weight (calculated)

49820.5 Da

IEP (calculated)

7.260

GRAVY (calculated)

-0.286

Length

448 amino acids

Sequence
(BLAST)

001: MGKQSLIYAF VARSTVVLAE YTEFTGNFTT IASQYLGKLP ASNNKSTYNC DGHTFNYLVE DGFTYCVVAV ESVGQQIPIA FLVRVKDDFS KRYAGGKAAT
101: AAPSSLNREF RSKLKEHMQY CVDHPEEINK LAKVQAQVSE VKNLMMENTE KVFDRGEKIE LLVDKIENLS SQVLSASLTN AAKELEAEIN EGGNAPNQDA
201: AVPWIGLRKR FLAPVRKQGA RRTCVFEASM VTTETHYKVN YNAKSPPEEF NYCLSLSDFK VYTSHTGKVL GANGSGGSLE NCMEVLKEVG VRGVDMASEK
301: KSEERFKIHA YRKFRRKDIH EVMLLLDQGK ALAASFPISD NWKSMNGVGV YEFQEERALP HLHRKGKFRG HSVMIVGYFP DSLEEDLAAL KSKDDIEEQA
401: QLLLKLAEVV LAFQNSYGEL WGELGGFGSI KAKSIGCYYL PIVCVGAA

Best Arabidopsis Sequence Match ( AT1G04750.1 )
(BLAST)

001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC

Arabidopsis Description

VAMP721Putative vesicle-associated membrane protein, synaptobrevin 7B [Source:UniProtKB/TrEMBL;Acc:Q681L9]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.