Factsheet for Zm00001d052756_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d002301_P001
Zm00001d013614_P001
Zm00001d013615_P001
Zm00001d033459_P001
Zm00001d037085_P005
Zm00001d045084_P002
Zm00001d052047_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22360.1	Zm00001d002301_P001	AT1G16500.1	21798944
AT5G22360.1	Zm00001d013614_P001	AT1G16500.1	21798944
AT5G22360.1	Zm00001d013615_P001	AT1G16500.1	21798944
AT5G22360.1	Zm00001d033459_P001	AT1G16500.1	21798944
AT5G22360.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT5G22360.1	Zm00001d037085_P005	AT2G24100.1	21798944
AT5G22360.1	Zm00001d045084_P002	AT2G24100.1	21798944
AT5G22360.1	Zm00001d052047_P001	AT2G24100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13179	Sorghum	endoplasmic reticulum, plasma membrane	99.48	86.49
TraesCS7B01G228700.1	Wheat	plasma membrane	94.3	81.98
TraesCS7A01G328000.1	Wheat	plasma membrane	94.3	81.98
TraesCS7D01G324800.1	Wheat	plasma membrane	94.3	81.98
HORVU7Hr1G078500.1	Barley	plasma membrane	93.78	81.53
Os10t0154000-01	Rice	plasma membrane	94.3	80.53
GSMUA_Achr11P...	Banana	endoplasmic reticulum	88.6	78.44
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	88.6	78.44
VIT_06s0080g00800.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	86.01	75.45
KRH25265	Soybean	plasma membrane	84.97	74.55
KRH30399	Soybean	endoplasmic reticulum	84.97	74.55
CDY09133	Canola	endoplasmic reticulum	84.46	73.76
Bra020187.1-P	Field mustard	endoplasmic reticulum	84.46	73.76
CDX88799	Canola	plasma membrane	83.42	72.85
CDX70999	Canola	endoplasmic reticulum	83.42	72.85
AT5G22360.1	Thale cress	plasma membrane	83.42	72.85
Bra006623.1-P	Field mustard	endoplasmic reticulum, plasma membrane	82.9	72.4
PGSC0003DMT400015063	Potato	plastid	84.97	71.93
Solyc06g074250.2.1	Tomato	endoplasmic reticulum, plasma membrane	85.49	63.22
Zm00001d018408_P001	Maize	cytosol	56.48	48.23
Zm00001d037483_P002	Maize	plasma membrane	60.1	45.67
Zm00001d007767_P001	Maize	extracellular	39.38	34.23
Zm00001d027808_P001	Maize	cytosol, mitochondrion	37.31	32.58
Zm00001d031942_P003	Maize	plastid	37.31	29.88
Zm00001d019091_P002	Maize	vacuole	38.86	28.74
Zm00001d013055_P002	Maize	extracellular, plasma membrane	34.2	27.97
Zm00001d019298_P002	Maize	cytosol	35.75	27.27
Zm00001d005468_P001	Maize	cytosol	35.23	26.88
Zm00001d048443_P002	Maize	peroxisome	36.27	22.58
Zm00001d034505_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	33.16	22.46
Zm00001d053132_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	15.03	21.64

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	UniProt:A0A1D6QJT6	ProteinID:AQK58008.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0006950
GO:GO:0008150	GO:GO:0009628	GO:GO:0009651	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192
InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774
PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF165
SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	SignalP:SignalP-noTM	InterPro:Synaptobrevin	UniParc:UPI000843317A
EnsemblPlantsGene:Zm00001d052756	EnsemblPlants:Zm00001d052756_P001	EnsemblPlants:Zm00001d052756_T001	:	:	:

Description

Putative vesicle-associated membrane protein family protein

Coordinates

chr4:+:199893960..199896622

Molecular Weight (calculated)

22009.8 Da

IEP (calculated)

9.949

GRAVY (calculated)

-0.086

Length

193 amino acids

Sequence
(BLAST)

001: MAIVYALVAR GTVVLAEFAA VSGNAGAVAR RILEKLPPDA ESRLCFAQDR YIFHVLRSDA AGITFLCMAN DTFGRRIPFL YLEDIQMRFM KNYGRVAHSA
101: LAYAMNDEFS RVLHQQMEFF SSNPSADTLN RLRGEVSEIH TVMVDNIEKI LDRGDRISLL VDKTSTMQDS AFHFRKQSKR LRRALWMKNA KLL

Best Arabidopsis Sequence Match ( AT5G22360.1 )
(BLAST)

001: MAIVYAVVAR GTVVLAEFSA VTGNTGAVVR RILEKLSPEI SDERLCFSQD RYIFHILRSD GLTFLCMAND TFGRRVPFSY LEEIHMRFMK NYGKVAHNAP
101: AYAMNDEFSR VLHQQMEFFS SNPSVDTLNR VRGEVSEIRS VMVENIEKIM ERGDRIELLV DKTATMQDSS FHFRKQSKRL RRALWMKNAK LLVLLTCLIV
201: FLLYIIIASF CGGITLPSCR S

Arabidopsis Description

VAMP714Vesicle-associated membrane protein 714 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMR5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.