Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d040689_P001 | |
| Zm00001d052756_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24100.1 | Zm00001d040689_P001 | AT1G73720.1 | 21798944 |
| AT4G30780.1 | Zm00001d052756_P001 | AT5G22360.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045084_P002 | Maize | cytosol | 90.72 | 90.89 |
| KXG19496 | Sorghum | nucleus | 89.42 | 89.93 |
| Os06t0186600-02 | Rice | cytosol | 57.14 | 78.97 |
| HORVU3Hr1G034290.1 | Barley | cytosol | 65.49 | 74.47 |
| TraesCS7B01G055300.1 | Wheat | cytosol | 71.99 | 73.21 |
| TraesCS7A01G151300.1 | Wheat | nucleus | 71.61 | 72.42 |
| HORVU7Hr1G031130.2 | Barley | nucleus | 71.06 | 72.4 |
| TraesCS7D01G153200.1 | Wheat | nucleus | 70.69 | 71.48 |
| Zm00001d052047_P001 | Maize | nucleus | 49.17 | 54.3 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 51.58 | 53.77 |
| VIT_11s0037g00810.t01 | Wine grape | cytosol | 51.76 | 50.45 |
| KRH63129 | Soybean | nucleus | 48.24 | 48.78 |
| PGSC0003DMT400036859 | Potato | cytosol | 46.01 | 47.97 |
| Solyc03g117680.2.1 | Tomato | cytosol | 47.5 | 47.94 |
| KRH54987 | Soybean | nucleus | 46.57 | 47.09 |
| CDX76839 | Canola | nucleus | 37.11 | 46.73 |
| Solyc07g005990.2.1 | Tomato | cytosol | 46.2 | 46.72 |
| PGSC0003DMT400029158 | Potato | cytosol | 46.2 | 46.72 |
| Bra039229.1-P | Field mustard | nucleus | 37.11 | 46.62 |
| CDY34799 | Canola | nucleus | 37.11 | 46.62 |
| AT2G24100.1 | Thale cress | nucleus | 40.26 | 46.57 |
| VIT_09s0018g01680.t01 | Wine grape | cytosol | 45.83 | 46.52 |
| KRH03001 | Soybean | cytosol | 41.93 | 45.84 |
| PGSC0003DMT400074432 | Potato | nucleus | 42.86 | 45.56 |
| KRH72344 | Soybean | cytosol | 44.34 | 44.67 |
| Solyc06g068540.2.1 | Tomato | cytosol | 42.67 | 43.64 |
| KRH58482 | Soybean | mitochondrion | 31.91 | 43.11 |
| CDY23256 | Canola | nucleus | 41.56 | 41.56 |
| Bra024044.1-P | Field mustard | nucleus | 43.6 | 41.37 |
| CDX68693 | Canola | cytosol | 42.49 | 41.26 |
| CDY39241 | Canola | cytosol | 43.23 | 41.09 |
| CDY36470 | Canola | nucleus | 42.12 | 40.97 |
| KRH44588 | Soybean | cytosol | 45.64 | 40.73 |
| Bra010274.1-P | Field mustard | cytosol | 41.93 | 40.65 |
| Bra011221.1-P | Field mustard | nucleus | 42.86 | 40.6 |
| CDY28214 | Canola | cytosol | 43.04 | 40.56 |
| KRH47309 | Soybean | nucleus | 44.9 | 40.4 |
| CDX72268 | Canola | nucleus | 42.12 | 40.11 |
| CDY28207 | Canola | cytosol | 12.62 | 40.0 |
| Bra011214.1-P | Field mustard | cytosol | 12.62 | 40.0 |
| AT4G30780.1 | Thale cress | nucleus | 43.6 | 39.9 |
| KRH28821 | Soybean | peroxisome | 26.35 | 33.26 |
Protein Annotations
| EMBL:BT086057 | EnsemblPlants:Zm00001d037085_P005 | EnsemblPlants:Zm00001d037085_T005 | EnsemblPlantsGene:Zm00001d037085 | EntrezGene:100275560 | PANTHER:PTHR33494 |
| PANTHER:PTHR33494:SF1 | ProteinID:AQK82802.1 | SEG:seg | UniParc:UPI0001A4BF15 | UniProt:C4J5G0 | MapMan:35.2 |
Description
No Description!
Coordinates
chr6:-:111709807..111715108
Molecular Weight (calculated)
58461.2 Da
IEP (calculated)
5.568
GRAVY (calculated)
-0.487
Length
539 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQLPSSGKR HAEPAEQTMA PARRAAAVKL EVEELGANER GPLSKRARPA QPMPPTPPQP QQDMYHNVLD EPSPLGLRLK KSPSLLDLIQ MRLSQASNAG
101: ESSMDNSGSE PSKKKDSKSG VSSAGERLKA SNFPANILKI GSWEYVSRYE GDLVAKCYFA KHKLVWEVLE GGLKSKIEIQ WSDIAALKAI CPENGQGTLD
201: VVLARPPLFF KETDPQPRKH TLWQAASDFT GGQASMHRRH FLQCPSTLLS KNFEKLIQCD QRLYQLSQQP EITLDPTLFE PRCTIFEDPV ESKCAGFTNL
301: KDEHRALPGY SDSVSPCAGS SISAKKENND SIRMPAEYPP QTVGIGIFTG VGAVGAQAVS RNVNGAAPEF NIPNWWSQLK VPGLRPSMSV DDLVNHLGNC
401: ISEQITSGDP ALANNEVPTK ETLEGIAQYL LGDTQGPPVT AAVERSLMAR VDSLCCLIQK DTAPVAKPKP EPNDGDSIGV EASDGSDEEF TSAPTGKPTD
501: ATNPPAMSRK DSFGELLTNL PRIASLPQFL FKIPEGTEN
101: ESSMDNSGSE PSKKKDSKSG VSSAGERLKA SNFPANILKI GSWEYVSRYE GDLVAKCYFA KHKLVWEVLE GGLKSKIEIQ WSDIAALKAI CPENGQGTLD
201: VVLARPPLFF KETDPQPRKH TLWQAASDFT GGQASMHRRH FLQCPSTLLS KNFEKLIQCD QRLYQLSQQP EITLDPTLFE PRCTIFEDPV ESKCAGFTNL
301: KDEHRALPGY SDSVSPCAGS SISAKKENND SIRMPAEYPP QTVGIGIFTG VGAVGAQAVS RNVNGAAPEF NIPNWWSQLK VPGLRPSMSV DDLVNHLGNC
401: ISEQITSGDP ALANNEVPTK ETLEGIAQYL LGDTQGPPVT AAVERSLMAR VDSLCCLIQK DTAPVAKPKP EPNDGDSIGV EASDGSDEEF TSAPTGKPTD
501: ATNPPAMSRK DSFGELLTNL PRIASLPQFL FKIPEGTEN
001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.