Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G006640.1 | |
| HORVU7Hr1G078500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24100.1 | HORVU0Hr1G006640.1 | AT1G73720.1 | 21798944 |
| AT4G30780.1 | HORVU7Hr1G078500.1 | AT5G22360.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G151300.1 | Wheat | nucleus | 95.46 | 94.75 |
| HORVU3Hr1G034290.1 | Barley | cytosol | 84.69 | 94.51 |
| TraesCS7D01G153200.1 | Wheat | nucleus | 94.9 | 94.18 |
| TraesCS7B01G055300.1 | Wheat | cytosol | 92.44 | 92.26 |
| Os06t0186600-02 | Rice | cytosol | 56.71 | 76.92 |
| KXG19496 | Sorghum | nucleus | 74.67 | 73.69 |
| Zm00001d037085_P005 | Maize | nucleus | 72.4 | 71.06 |
| Zm00001d045084_P002 | Maize | cytosol | 71.64 | 70.45 |
| HORVU0Hr1G040420.1 | Barley | cytosol | 20.98 | 64.91 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 52.93 | 54.16 |
| VIT_11s0037g00810.t01 | Wine grape | cytosol | 50.47 | 48.28 |
| PGSC0003DMT400036859 | Potato | cytosol | 45.75 | 46.81 |
| AT2G24100.1 | Thale cress | nucleus | 41.21 | 46.78 |
| CDX76839 | Canola | nucleus | 37.62 | 46.5 |
| CDY34799 | Canola | nucleus | 37.62 | 46.39 |
| Bra039229.1-P | Field mustard | nucleus | 37.62 | 46.39 |
| KRH63129 | Soybean | nucleus | 46.69 | 46.34 |
| Solyc03g117680.2.1 | Tomato | cytosol | 46.69 | 46.25 |
| PGSC0003DMT400074432 | Potato | nucleus | 44.23 | 46.15 |
| Solyc07g005990.2.1 | Tomato | cytosol | 46.12 | 45.78 |
| PGSC0003DMT400029158 | Potato | cytosol | 45.94 | 45.59 |
| KRH03001 | Soybean | cytosol | 42.34 | 45.44 |
| KRH54987 | Soybean | nucleus | 45.75 | 45.4 |
| VIT_09s0018g01680.t01 | Wine grape | cytosol | 44.42 | 44.26 |
| KRH72344 | Soybean | cytosol | 44.23 | 43.74 |
| Solyc06g068540.2.1 | Tomato | cytosol | 43.48 | 43.64 |
| CDY23256 | Canola | nucleus | 42.91 | 42.12 |
| KRH58482 | Soybean | mitochondrion | 31.76 | 42.11 |
| KRH47309 | Soybean | nucleus | 46.69 | 41.24 |
| KRH44588 | Soybean | cytosol | 47.07 | 41.23 |
| CDY36470 | Canola | nucleus | 42.91 | 40.97 |
| HORVU5Hr1G050970.2 | Barley | nucleus | 41.21 | 40.82 |
| CDX68693 | Canola | cytosol | 42.72 | 40.72 |
| Bra010274.1-P | Field mustard | cytosol | 42.72 | 40.65 |
| Bra024044.1-P | Field mustard | nucleus | 43.1 | 40.14 |
| Bra011221.1-P | Field mustard | nucleus | 42.91 | 39.89 |
| CDY28214 | Canola | cytosol | 43.1 | 39.86 |
| CDY39241 | Canola | cytosol | 42.72 | 39.86 |
| CDX72268 | Canola | nucleus | 42.16 | 39.4 |
| AT4G30780.1 | Thale cress | nucleus | 43.29 | 38.88 |
| CDY28207 | Canola | cytosol | 12.48 | 38.82 |
| Bra011214.1-P | Field mustard | cytosol | 12.48 | 38.82 |
| KRH28821 | Soybean | peroxisome | 29.3 | 36.3 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G031130.2 | EnsemblPlantsGene:HORVU7Hr1G031130 | PANTHER:PTHR33494 | PANTHER:PTHR33494:SF1 | SEG:seg | UniParc:UPI000B46A103 |
| UniProt:A0A287VY02 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:+:62857770..62862621
Molecular Weight (calculated)
57791.9 Da
IEP (calculated)
4.946
GRAVY (calculated)
-0.582
Length
529 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQLPAMGKR QHAEPAEPPM APAAAVKMEA DELRDYEHGP LGKRARPAQP SPPPHQDMYH NVLDEPSPLG LRLKKSPSLL DLIQMRLSQA NSDAGQSSTD
101: NAEPSKKKDL KSGTSSSAGE RLKASNFPAS VLRIGTWEYT SRYEGDLVAK CYFAKHKLVW EVLEGGLKSK IEIQWSDITA LKVTLPESGQ GSLDVMLARP
201: PLFFKETDPQ PRKHTLWQAT SDFTGGQASM NRHHFLQCPT TLLGKNFEKL VQCDQRLHQL SQQTDVILDS SVFEPRCSIF EDPVELKCHD FANLKDERED
301: LPGFSGSVSP CAGSSMSTKN DTNDCFGKQP EFVAQPMNPG ASAVNAQPVS RNVNGVAQEF NIPNWWSQLK VPGLRPSMSV DDLVSHLGNC ISEQITSGNP
401: SMANNVVPTK ESLEEIAQYL LGDAQGPQAP ASDERLMARV DSLCCLLQKD AAPTAQPKPE PNNSGSIGGE DSEGSDDEFS SASTRETADA NQPPPAMSRK
501: DSFGDLLMNL PRIASIPQFL FKIPEDSEN
101: NAEPSKKKDL KSGTSSSAGE RLKASNFPAS VLRIGTWEYT SRYEGDLVAK CYFAKHKLVW EVLEGGLKSK IEIQWSDITA LKVTLPESGQ GSLDVMLARP
201: PLFFKETDPQ PRKHTLWQAT SDFTGGQASM NRHHFLQCPT TLLGKNFEKL VQCDQRLHQL SQQTDVILDS SVFEPRCSIF EDPVELKCHD FANLKDERED
301: LPGFSGSVSP CAGSSMSTKN DTNDCFGKQP EFVAQPMNPG ASAVNAQPVS RNVNGVAQEF NIPNWWSQLK VPGLRPSMSV DDLVSHLGNC ISEQITSGNP
401: SMANNVVPTK ESLEEIAQYL LGDAQGPQAP ASDERLMARV DSLCCLLQKD AAPTAQPKPE PNNSGSIGGE DSEGSDDEFS SASTRETADA NQPPPAMSRK
501: DSFGDLLMNL PRIASIPQFL FKIPEDSEN
001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.