Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G006640.1 | |
| HORVU7Hr1G078500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24100.1 | HORVU0Hr1G006640.1 | AT1G73720.1 | 21798944 |
| AT4G30780.1 | HORVU7Hr1G078500.1 | AT5G22360.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0793800-00 | Rice | cytosol | 51.46 | 30.34 |
| TraesCS6A01G354900.1 | Wheat | mitochondrion | 76.61 | 27.12 |
| TraesCS6D01G337100.2 | Wheat | mitochondrion | 77.19 | 26.19 |
| TraesCS6B01G387700.1 | Wheat | mitochondrion | 71.93 | 25.52 |
| Bra011214.1-P | Field mustard | cytosol | 24.56 | 24.71 |
| CDY28207 | Canola | cytosol | 24.56 | 24.71 |
| HORVU3Hr1G034290.1 | Barley | cytosol | 64.91 | 23.42 |
| KXG31260 | Sorghum | cytosol | 64.91 | 22.24 |
| Zm00001d052047_P001 | Maize | nucleus | 63.16 | 22.13 |
| CDX76839 | Canola | nucleus | 54.97 | 21.96 |
| Bra039229.1-P | Field mustard | nucleus | 54.97 | 21.91 |
| CDY34799 | Canola | nucleus | 54.97 | 21.91 |
| HORVU7Hr1G031130.2 | Barley | nucleus | 64.91 | 20.98 |
| AT2G24100.1 | Thale cress | nucleus | 55.56 | 20.39 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 61.4 | 20.31 |
| PGSC0003DMT400036859 | Potato | cytosol | 56.73 | 18.76 |
| KRH03001 | Soybean | cytosol | 53.22 | 18.46 |
| VIT_09s0018g01680.t01 | Wine grape | cytosol | 57.31 | 18.46 |
| VIT_11s0037g00810.t01 | Wine grape | cytosol | 59.65 | 18.44 |
| CDY23256 | Canola | nucleus | 57.89 | 18.37 |
| Solyc03g117680.2.1 | Tomato | cytosol | 57.31 | 18.35 |
| PGSC0003DMT400074432 | Potato | nucleus | 54.39 | 18.34 |
| HORVU5Hr1G050970.2 | Barley | nucleus | 56.73 | 18.16 |
| CDY36470 | Canola | nucleus | 57.31 | 17.69 |
| CDX68693 | Canola | cytosol | 57.31 | 17.66 |
| KRH54987 | Soybean | nucleus | 54.97 | 17.64 |
| PGSC0003DMT400029158 | Potato | cytosol | 54.97 | 17.64 |
| Solyc07g005990.2.1 | Tomato | cytosol | 54.97 | 17.64 |
| Bra010274.1-P | Field mustard | cytosol | 57.31 | 17.63 |
| CDY39241 | Canola | cytosol | 57.89 | 17.46 |
| KRH63129 | Soybean | nucleus | 54.39 | 17.45 |
| Bra024044.1-P | Field mustard | nucleus | 57.89 | 17.43 |
| Bra011221.1-P | Field mustard | nucleus | 57.89 | 17.4 |
| CDX72268 | Canola | nucleus | 57.31 | 17.31 |
| CDY28214 | Canola | cytosol | 57.89 | 17.31 |
| KRH58482 | Soybean | mitochondrion | 40.35 | 17.29 |
| Solyc06g068540.2.1 | Tomato | cytosol | 52.63 | 17.08 |
| KRH72344 | Soybean | cytosol | 53.22 | 17.01 |
| AT4G30780.1 | Thale cress | nucleus | 57.31 | 16.64 |
| KRH44588 | Soybean | cytosol | 55.56 | 15.73 |
| KRH47309 | Soybean | nucleus | 54.97 | 15.69 |
| KRH28821 | Soybean | peroxisome | 16.37 | 6.56 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G040420.1 | EnsemblPlantsGene:HORVU0Hr1G040420 | PANTHER:PTHR33494 | UniParc:UPI000B4693F9 | UniProt:A0A287EDY6 | MapMan:35.2 |
Description
No Description!
Coordinates
chrchrUn:+:249687927..249688650
Molecular Weight (calculated)
19372.3 Da
IEP (calculated)
9.083
GRAVY (calculated)
-0.425
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: DMFVDIINEP LPLGLRLKKS PSFADLIGRR LSKENSTKDR STMKNIVSKP PLRKDVKSGA LLKASNFAAN FLKIGNWEYT SQYEGDLVAK CYYAKHKLVW
101: EVLNDGLKSK IELQWLHITA IKATCPEEGD GTLDLLLSRP PIFFEETDPQ PRKHTLWQIA PDFTSGQASM H
101: EVLNDGLKSK IELQWLHITA IKATCPEEGD GTLDLLLSRP PIFFEETDPQ PRKHTLWQIA PDFTSGQASM H
001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.