Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G006640.1 | |
| HORVU7Hr1G078500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24100.1 | HORVU0Hr1G006640.1 | AT1G73720.1 | 21798944 |
| AT4G30780.1 | HORVU7Hr1G078500.1 | AT5G22360.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G031130.2 | Barley | nucleus | 94.51 | 84.69 |
| TraesCS7B01G055300.1 | Wheat | cytosol | 93.46 | 83.58 |
| TraesCS7A01G151300.1 | Wheat | nucleus | 91.35 | 81.24 |
| TraesCS7D01G153200.1 | Wheat | nucleus | 90.72 | 80.68 |
| Os06t0186600-02 | Rice | cytosol | 63.92 | 77.69 |
| KXG19496 | Sorghum | nucleus | 75.32 | 66.6 |
| Zm00001d045084_P002 | Maize | cytosol | 74.68 | 65.8 |
| Zm00001d037085_P005 | Maize | nucleus | 74.47 | 65.49 |
| HORVU0Hr1G040420.1 | Barley | cytosol | 23.42 | 64.91 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 54.64 | 50.1 |
| VIT_11s0037g00810.t01 | Wine grape | cytosol | 52.74 | 45.21 |
| PGSC0003DMT400074432 | Potato | nucleus | 47.47 | 44.38 |
| KRH03001 | Soybean | cytosol | 45.99 | 44.22 |
| KRH63129 | Soybean | nucleus | 49.58 | 44.09 |
| AT2G24100.1 | Thale cress | nucleus | 43.04 | 43.78 |
| PGSC0003DMT400036859 | Potato | cytosol | 47.68 | 43.71 |
| CDX76839 | Canola | nucleus | 39.45 | 43.69 |
| CDY34799 | Canola | nucleus | 39.45 | 43.59 |
| Bra039229.1-P | Field mustard | nucleus | 39.45 | 43.59 |
| Solyc07g005990.2.1 | Tomato | cytosol | 48.95 | 43.53 |
| VIT_09s0018g01680.t01 | Wine grape | cytosol | 48.73 | 43.5 |
| Solyc03g117680.2.1 | Tomato | cytosol | 48.73 | 43.26 |
| PGSC0003DMT400029158 | Potato | cytosol | 48.52 | 43.15 |
| KRH58482 | Soybean | mitochondrion | 36.29 | 43.11 |
| KRH54987 | Soybean | nucleus | 48.31 | 42.96 |
| Solyc06g068540.2.1 | Tomato | cytosol | 46.62 | 41.94 |
| KRH72344 | Soybean | cytosol | 47.26 | 41.87 |
| CDY23256 | Canola | nucleus | 45.36 | 39.89 |
| KRH44588 | Soybean | cytosol | 50.21 | 39.4 |
| KRH47309 | Soybean | nucleus | 49.37 | 39.07 |
| CDY36470 | Canola | nucleus | 45.15 | 38.63 |
| Bra010274.1-P | Field mustard | cytosol | 45.15 | 38.49 |
| HORVU5Hr1G050970.2 | Barley | nucleus | 43.25 | 38.39 |
| CDX68693 | Canola | cytosol | 44.94 | 38.38 |
| Bra011221.1-P | Field mustard | nucleus | 45.36 | 37.79 |
| Bra024044.1-P | Field mustard | nucleus | 45.15 | 37.68 |
| CDY28214 | Canola | cytosol | 45.36 | 37.59 |
| CDY39241 | Canola | cytosol | 44.94 | 37.57 |
| CDX72268 | Canola | nucleus | 44.51 | 37.28 |
| KRH28821 | Soybean | peroxisome | 32.91 | 36.53 |
| AT4G30780.1 | Thale cress | nucleus | 45.36 | 36.5 |
| CDY28207 | Canola | cytosol | 11.39 | 31.76 |
| Bra011214.1-P | Field mustard | cytosol | 11.39 | 31.76 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G034290.1 | EnsemblPlantsGene:HORVU3Hr1G034290 | PANTHER:PTHR33494 | PANTHER:PTHR33494:SF1 | SEG:seg | UniParc:UPI000B4615CA |
| UniProt:A0A287KQF2 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:185698313..185702095
Molecular Weight (calculated)
50513.4 Da
IEP (calculated)
4.760
GRAVY (calculated)
-0.493
Length
474 amino acids
Sequence
(BLAST)
(BLAST)
001: LDMYHNVLDE PSPLGLRLKK SPSLLDLIQM RLSQANSDAG QSSTDNAEPS KKKDLKSGTS SSAGERLKAS NFPASVLRIG TWEYTSRYEG DLVAKCYFAK
101: HKLVWEVLEG GLKSKIEIQW SDITALKVTL PESGQGSLDV MLARPPLFFK ETDPQPRKHT LWQATSDFTG GQASMNRHHF LQCPTTLLGK NFEKLVQCDQ
201: RLHQLSQQTD VILDSSVFEP RCSIFEDPVE LKCHDFANLK DEREDLPGFS GSVSPCAGSS MSTKNDTNDC FGKQPEFVAQ PMNPGASAVN AQPVSRNVNG
301: VAQEFNIPNW WSQLKVPGLR PSMSVDDLVS HLGNCISEQI TSGNPSMANN VVPTKESLEE IAQYLLGDAQ GPQAPASDER LMARVDSLCC LLQKDAAPTA
401: QPKPEPNNSG SIGGEDSEGS DDEFXXXXXX XXXXXXXPPP AMSRKDSFGD LLMNLPRIAS IPQFLFKIPE DSEN
101: HKLVWEVLEG GLKSKIEIQW SDITALKVTL PESGQGSLDV MLARPPLFFK ETDPQPRKHT LWQATSDFTG GQASMNRHHF LQCPTTLLGK NFEKLVQCDQ
201: RLHQLSQQTD VILDSSVFEP RCSIFEDPVE LKCHDFANLK DEREDLPGFS GSVSPCAGSS MSTKNDTNDC FGKQPEFVAQ PMNPGASAVN AQPVSRNVNG
301: VAQEFNIPNW WSQLKVPGLR PSMSVDDLVS HLGNCISEQI TSGNPSMANN VVPTKESLEE IAQYLLGDAQ GPQAPASDER LMARVDSLCC LLQKDAAPTA
401: QPKPEPNNSG SIGGEDSEGS DDEFXXXXXX XXXXXXXPPP AMSRKDSFGD LLMNLPRIAS IPQFLFKIPE DSEN
001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.