Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d040689_P001 | |
| Zm00001d052756_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24100.1 | Zm00001d040689_P001 | AT1G73720.1 | 21798944 |
| AT4G30780.1 | Zm00001d052756_P001 | AT5G22360.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG19496 | Sorghum | nucleus | 91.64 | 91.98 |
| Zm00001d037085_P005 | Maize | nucleus | 90.89 | 90.72 |
| Os06t0186600-02 | Rice | cytosol | 58.18 | 80.26 |
| HORVU3Hr1G034290.1 | Barley | cytosol | 65.8 | 74.68 |
| TraesCS7B01G055300.1 | Wheat | cytosol | 71.93 | 73.02 |
| TraesCS7A01G151300.1 | Wheat | nucleus | 71.19 | 71.86 |
| HORVU7Hr1G031130.2 | Barley | nucleus | 70.45 | 71.64 |
| TraesCS7D01G153200.1 | Wheat | nucleus | 70.45 | 71.11 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 52.04 | 54.16 |
| Zm00001d052047_P001 | Maize | nucleus | 48.88 | 53.89 |
| VIT_11s0037g00810.t01 | Wine grape | cytosol | 52.42 | 50.99 |
| KRH63129 | Soybean | nucleus | 48.7 | 49.16 |
| PGSC0003DMT400036859 | Potato | cytosol | 46.28 | 48.16 |
| Solyc03g117680.2.1 | Tomato | cytosol | 47.21 | 47.57 |
| KRH54987 | Soybean | nucleus | 47.03 | 47.47 |
| PGSC0003DMT400029158 | Potato | cytosol | 46.84 | 47.28 |
| PGSC0003DMT400074432 | Potato | nucleus | 44.24 | 46.94 |
| Solyc07g005990.2.1 | Tomato | cytosol | 46.47 | 46.9 |
| KRH03001 | Soybean | cytosol | 42.94 | 46.86 |
| CDX76839 | Canola | nucleus | 36.99 | 46.5 |
| CDY34799 | Canola | nucleus | 36.99 | 46.39 |
| Bra039229.1-P | Field mustard | nucleus | 36.99 | 46.39 |
| VIT_09s0018g01680.t01 | Wine grape | cytosol | 45.72 | 46.33 |
| AT2G24100.1 | Thale cress | nucleus | 39.78 | 45.92 |
| KRH72344 | Soybean | cytosol | 45.17 | 45.42 |
| Solyc06g068540.2.1 | Tomato | cytosol | 43.87 | 44.78 |
| KRH58482 | Soybean | mitochondrion | 32.53 | 43.86 |
| CDY23256 | Canola | nucleus | 41.82 | 41.74 |
| CDX68693 | Canola | cytosol | 42.19 | 40.9 |
| KRH44588 | Soybean | cytosol | 45.91 | 40.89 |
| Bra024044.1-P | Field mustard | nucleus | 43.12 | 40.85 |
| CDY36470 | Canola | nucleus | 42.01 | 40.79 |
| CDY39241 | Canola | cytosol | 42.94 | 40.74 |
| KRH47309 | Soybean | nucleus | 45.35 | 40.73 |
| Bra010274.1-P | Field mustard | cytosol | 42.01 | 40.65 |
| Bra011221.1-P | Field mustard | nucleus | 42.19 | 39.89 |
| CDY28214 | Canola | cytosol | 42.38 | 39.86 |
| CDX72268 | Canola | nucleus | 41.82 | 39.75 |
| AT4G30780.1 | Thale cress | nucleus | 43.12 | 39.39 |
| CDY28207 | Canola | cytosol | 12.27 | 38.82 |
| Bra011214.1-P | Field mustard | cytosol | 12.27 | 38.82 |
| KRH28821 | Soybean | peroxisome | 26.77 | 33.72 |
Protein Annotations
| EnsemblPlants:Zm00001d045084_P002 | EnsemblPlants:Zm00001d045084_T002 | EnsemblPlantsGene:Zm00001d045084 | PANTHER:PTHR33494 | PANTHER:PTHR33494:SF1 | ProteinID:AQL01513.1 |
| SEG:seg | UniParc:UPI000845726A | UniProt:A0A1D6NTI5 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr9:+:12042437..12047675
Molecular Weight (calculated)
58152.6 Da
IEP (calculated)
5.282
GRAVY (calculated)
-0.468
Length
538 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQLPSSGKR HAEPAMAPAR RAATVKLEVE ELGADERCPL SKRAKAALPM PPTPPQPQQD MYHNVLDEPS PLGLRLKKSP SLLDLIQMRL SQASNAGESS
101: MDNSGSEPSK KKDNKSGASA AGERLKASNF PASILKIGSW EYVSRYEGDL VAKCYFAKHK LVWEVLEGGL KSKIEIQWSD ITALKATCPE NGQGTLDVAV
201: RLSGDLARPP LFFKETDPQP RKHTLWQATS DFTGGQASVH RRHFLQCPST LLSKNFEKLI QCDQRLYQLS QQPEITLDSA LFEPRSSIFE DPVESKCAGF
301: TNLKDEHEAL PGYSGPVSPC AGSSISAKNE NNDSIGMTAE YLSQTVGTGV GAVGVQAVGR NVNGAAPEFT IPHWWSQLKV PGLRPSMSVD DFVNHLGNCI
401: SEQITSGNPA LANNEVPTKE TLEGIAQYLL GDTQGPPVSA SDERSLMARV DSLCCLIQKD TVPVTKPKPE PNDSDSIGVE ASDGSDEEFS SAPTGKPTDA
501: TNLPAMSRKD SFGELLTNLP RIASLPQFLF KIPEGTEN
101: MDNSGSEPSK KKDNKSGASA AGERLKASNF PASILKIGSW EYVSRYEGDL VAKCYFAKHK LVWEVLEGGL KSKIEIQWSD ITALKATCPE NGQGTLDVAV
201: RLSGDLARPP LFFKETDPQP RKHTLWQATS DFTGGQASVH RRHFLQCPST LLSKNFEKLI QCDQRLYQLS QQPEITLDSA LFEPRSSIFE DPVESKCAGF
301: TNLKDEHEAL PGYSGPVSPC AGSSISAKNE NNDSIGMTAE YLSQTVGTGV GAVGVQAVGR NVNGAAPEFT IPHWWSQLKV PGLRPSMSVD DFVNHLGNCI
401: SEQITSGNPA LANNEVPTKE TLEGIAQYLL GDTQGPPVSA SDERSLMARV DSLCCLIQKD TVPVTKPKPE PNDSDSIGVE ASDGSDEEFS SAPTGKPTDA
501: TNLPAMSRKD SFGELLTNLP RIASLPQFLF KIPEGTEN
001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.