Factsheet for Bra010274.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006623.1-P
Bra020187.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30780.1	Bra006623.1-P	AT5G22360.1	21798944
AT4G30780.1	Bra020187.1-P	AT5G22360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23256	Canola	nucleus	95.32	98.33
Bra024044.1-P	Field mustard	nucleus	80.04	78.35
Bra011221.1-P	Field mustard	nucleus	76.8	75.04
AT4G30780.1	Thale cress	nucleus	74.64	70.46
Bra039229.1-P	Field mustard	nucleus	47.12	61.07
Bra011214.1-P	Field mustard	cytosol	18.17	59.41
HORVU0Hr1G040420.1	Barley	cytosol	17.63	57.31
KRH63129	Soybean	nucleus	47.3	49.34
KRH54987	Soybean	nucleus	46.4	48.41
VIT_11s0037g00810.t01	Wine grape	cytosol	47.3	47.56
Os06t0186600-02	Rice	cytosol	32.01	45.64
HORVU3Hr1G034290.1	Barley	cytosol	38.49	45.15
KRH03001	Soybean	cytosol	39.75	44.83
Os02t0793800-00	Rice	cytosol	23.02	44.14
Solyc07g005990.2.1	Tomato	cytosol	42.09	43.9
KRH72344	Soybean	cytosol	42.09	43.74
PGSC0003DMT400029158	Potato	cytosol	41.55	43.34
HORVU7Hr1G031130.2	Barley	nucleus	40.65	42.72
TraesCS7B01G055300.1	Wheat	cytosol	40.29	42.26
KXG19496	Sorghum	nucleus	40.65	42.16
TraesCS7A01G151300.1	Wheat	nucleus	40.29	42.03
Zm00001d045084_P002	Maize	cytosol	40.65	42.01
Zm00001d037085_P005	Maize	nucleus	40.65	41.93
TraesCS7D01G153200.1	Wheat	nucleus	40.11	41.84
GSMUA_Achr9P22760_001	Banana	nucleus	39.93	41.73
GSMUA_Achr4P05930_001	Banana	cytosol	38.85	40.37
KRH58482	Soybean	mitochondrion	28.78	40.1
GSMUA_Achr5P04640_001	Banana	nucleus	37.05	39.85
KXG31260	Sorghum	cytosol	35.25	39.28
GSMUA_Achr4P12730_001	Banana	mitochondrion	40.29	38.42
Zm00001d052047_P001	Maize	nucleus	33.45	38.11
GSMUA_Achr4P11470_001	Banana	plasma membrane	37.77	37.23
TraesCS6B01G387700.1	Wheat	mitochondrion	29.32	33.82
Bra018890.1-P	Field mustard	nucleus	14.57	32.93
TraesCS6A01G354900.1	Wheat	mitochondrion	28.42	32.71
TraesCS6D01G337100.2	Wheat	mitochondrion	28.6	31.55
Bra001166.1-P	Field mustard	mitochondrion	8.45	26.11
Bra039411.1-P	Field mustard	plastid	17.27	18.79
Bra001165.1-P	Field mustard	mitochondrion	6.29	15.22

Protein Annotations

EnsemblPlants:Bra010274.1	EnsemblPlants:Bra010274.1-P	EnsemblPlantsGene:Bra010274	PANTHER:PTHR33494	PANTHER:PTHR33494:SF1	UniParc:UPI0002546EFC
UniProt:M4D1C5	MapMan:35.2	:	:	:	:

Description

AT4G30780 (E=1e-248) | unknown protein

Coordinates

chrA08:-:13570218..13572333

Molecular Weight (calculated)

60994.0 Da

IEP (calculated)

6.332

GRAVY (calculated)

-0.526

Length

556 amino acids

Sequence
(BLAST)

001: MRPESKSAAK CRDELPVKLE IAEDGLEEEH GPLNKRSKLW SSSPMAPAKY SPFDGPSPLG LSLRKSPSLL DLIQMRLTQS GDPKAGGSGG VNHESKCITA
101: GSNLGPGSIE KLKASNFPAS VLKIGQWEYK SRYEGDLVAK CYFAKHKLVW EVLERGLKSK IEIQWSDIVG LKANCPEKGP GTLTLLLSRQ PLFFRETNPQ
201: PRKHTLWQAT SDFTDGQASM YRKHFLQCAE GIMNKHLEKL VQCDHRLLYL SREPEIIMDS PCFDARRSIF EDPSESKKGN NPFGSFNLSK APSVSGTRNL
301: ASPVGAQSSS EHMYLSHEAP SPSSDARANE AVNSRNTTDC GQMGGLRQSM SLSDFLAVLC DPKDTSDSSQ VDEVAGLHQS MSVSDFLAVL SDSGNITDSS
401: QIKVPGLQQS MSVSDFVGLL SDSAVGNHPE HMENFNGMKQ QLLSNNIQFD APQDEKSLMP RVDSLFNLLY KDLNGAANSQ LNTEVSVGLK SELSDLKGIV
501: PDNNNNRVLD PASSSRPQGM LRKDSFSDLL LHLPRITSLP KFLSNISEED SDAYNR

Best Arabidopsis Sequence Match ( AT4G30780.1 )
(BLAST)

001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.