Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68693 | Canola | cytosol | 77.08 | 81.8 |
| CDY28214 | Canola | cytosol | 78.27 | 80.59 |
| Bra011221.1-P | Field mustard | nucleus | 77.08 | 79.79 |
| Bra024044.1-P | Field mustard | nucleus | 76.74 | 79.58 |
| CDY39241 | Canola | cytosol | 76.57 | 79.54 |
| CDX72268 | Canola | nucleus | 73.85 | 76.86 |
| CDY23256 | Canola | nucleus | 68.93 | 75.32 |
| CDY36470 | Canola | nucleus | 70.29 | 74.73 |
| Bra010274.1-P | Field mustard | cytosol | 70.46 | 74.64 |
| Bra011214.1-P | Field mustard | cytosol | 18.34 | 63.53 |
| CDY28207 | Canola | cytosol | 18.34 | 63.53 |
| AT2G24100.1 | Thale cress | nucleus | 49.58 | 62.66 |
| HORVU0Hr1G040420.1 | Barley | cytosol | 16.64 | 57.31 |
| KRH63129 | Soybean | nucleus | 46.52 | 51.41 |
| KRH54987 | Soybean | nucleus | 46.52 | 51.41 |
| VIT_11s0037g00810.t01 | Wine grape | cytosol | 47.37 | 50.45 |
| KRH03001 | Soybean | cytosol | 40.58 | 48.48 |
| Os02t0793800-00 | Rice | cytosol | 23.43 | 47.59 |
| KRH72344 | Soybean | cytosol | 42.95 | 47.29 |
| Solyc07g005990.2.1 | Tomato | cytosol | 42.27 | 46.72 |
| Os06t0186600-02 | Rice | cytosol | 30.9 | 46.67 |
| PGSC0003DMT400029158 | Potato | cytosol | 42.11 | 46.53 |
| HORVU3Hr1G034290.1 | Barley | cytosol | 36.5 | 45.36 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 38.37 | 43.71 |
| GSMUA_Achr9P22760_001 | Banana | nucleus | 39.39 | 43.61 |
| Zm00001d037085_P005 | Maize | nucleus | 39.9 | 43.6 |
| KXG19496 | Sorghum | nucleus | 39.56 | 43.47 |
| HORVU7Hr1G031130.2 | Barley | nucleus | 38.88 | 43.29 |
| TraesCS7B01G055300.1 | Wheat | cytosol | 38.88 | 43.21 |
| Zm00001d045084_P002 | Maize | cytosol | 39.39 | 43.12 |
| GSMUA_Achr4P05930_001 | Banana | cytosol | 39.05 | 42.99 |
| TraesCS7A01G151300.1 | Wheat | nucleus | 38.71 | 42.78 |
| TraesCS7D01G153200.1 | Wheat | nucleus | 38.54 | 42.59 |
| KRH58482 | Soybean | mitochondrion | 28.52 | 42.11 |
| KXG31260 | Sorghum | cytosol | 34.13 | 40.28 |
| GSMUA_Achr4P12730_001 | Banana | mitochondrion | 39.39 | 39.79 |
| Zm00001d052047_P001 | Maize | nucleus | 31.92 | 38.52 |
| GSMUA_Achr4P11470_001 | Banana | plasma membrane | 36.33 | 37.94 |
| TraesCS6B01G387700.1 | Wheat | mitochondrion | 29.37 | 35.89 |
| TraesCS6A01G354900.1 | Wheat | mitochondrion | 28.52 | 34.78 |
| TraesCS6D01G337100.2 | Wheat | mitochondrion | 28.52 | 33.33 |
| AT1G54300.1 | Thale cress | cytosol, nucleus, vacuole | 14.94 | 28.03 |
| AT3G05770.1 | Thale cress | nucleus | 18.51 | 26.59 |
Protein Annotations
| MapMan:35.2 | EntrezGene:829201 | ProteinID:AEE85808.1 | ArrayExpress:AT4G30780 | EnsemblPlantsGene:AT4G30780 | RefSeq:AT4G30780 |
| TAIR:AT4G30780 | RefSeq:AT4G30780-TAIR-G | EnsemblPlants:AT4G30780.1 | TAIR:AT4G30780.1 | Unigene:At.42964 | EMBL:BT004291 |
| EMBL:BT005518 | ProteinID:CAB52451.1 | ProteinID:CAB79796.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0008150 | GO:GO:0016787 | RefSeq:NP_194807.1 | PO:PO:0000293 | PANTHER:PTHR33494 | PANTHER:PTHR33494:SF1 |
| UniProt:Q9SUG8 | UniParc:UPI000000C321 | SEG:seg | : | : | : |
Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
Coordinates
chr4:+:14990286..14993085
Molecular Weight (calculated)
64577.0 Da
IEP (calculated)
5.725
GRAVY (calculated)
-0.517
Length
589 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.