Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G387700.1 | Wheat | mitochondrion | 82.94 | 86.72 |
| TraesCS6A01G354900.1 | Wheat | mitochondrion | 78.97 | 82.4 |
| HORVU0Hr1G040420.1 | Barley | cytosol | 26.19 | 77.19 |
| Os02t0793800-00 | Rice | cytosol | 24.8 | 43.1 |
| Zm00001d052047_P001 | Maize | nucleus | 37.1 | 38.32 |
| KXG31260 | Sorghum | cytosol | 37.7 | 38.08 |
| TraesCS7D01G153200.1 | Wheat | nucleus | 38.89 | 36.77 |
| Bra039229.1-P | Field mustard | nucleus | 31.15 | 36.6 |
| CDX76839 | Canola | nucleus | 30.75 | 36.22 |
| CDY34799 | Canola | nucleus | 30.75 | 36.13 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 36.31 | 35.4 |
| AT2G24100.1 | Thale cress | nucleus | 32.14 | 34.76 |
| PGSC0003DMT400036859 | Potato | cytosol | 33.73 | 32.88 |
| VIT_11s0037g00810.t01 | Wine grape | cytosol | 35.91 | 32.73 |
| KRH03001 | Soybean | cytosol | 31.35 | 32.05 |
| Solyc03g117680.2.1 | Tomato | cytosol | 33.73 | 31.84 |
| KRH54987 | Soybean | nucleus | 32.54 | 30.77 |
| PGSC0003DMT400074432 | Potato | nucleus | 30.75 | 30.57 |
| PGSC0003DMT400029158 | Potato | cytosol | 32.14 | 30.39 |
| KRH63129 | Soybean | nucleus | 32.14 | 30.39 |
| Solyc07g005990.2.1 | Tomato | cytosol | 32.14 | 30.39 |
| VIT_09s0018g01680.t01 | Wine grape | cytosol | 31.94 | 30.32 |
| CDY23256 | Canola | nucleus | 31.55 | 29.5 |
| CDY36470 | Canola | nucleus | 32.34 | 29.42 |
| TraesCS5D01G168600.1 | Wheat | nucleus | 30.75 | 29.19 |
| CDX68693 | Canola | cytosol | 31.94 | 29.01 |
| KRH72344 | Soybean | cytosol | 30.75 | 28.97 |
| Bra010274.1-P | Field mustard | cytosol | 31.55 | 28.6 |
| AT4G30780.1 | Thale cress | nucleus | 33.33 | 28.52 |
| Solyc06g068540.2.1 | Tomato | cytosol | 29.76 | 28.46 |
| CDX72268 | Canola | nucleus | 31.94 | 28.45 |
| KRH58482 | Soybean | mitochondrion | 22.42 | 28.32 |
| CDY39241 | Canola | cytosol | 31.75 | 28.22 |
| Bra024044.1-P | Field mustard | nucleus | 31.75 | 28.17 |
| CDY28214 | Canola | cytosol | 31.94 | 28.15 |
| Bra011221.1-P | Field mustard | nucleus | 31.55 | 27.94 |
| KRH44588 | Soybean | cytosol | 30.95 | 25.83 |
| KRH47309 | Soybean | nucleus | 30.56 | 25.71 |
| CDY28207 | Canola | cytosol | 8.33 | 24.71 |
| Bra011214.1-P | Field mustard | cytosol | 8.33 | 24.71 |
| TraesCS5D01G505800.1 | Wheat | cytosol | 20.24 | 23.83 |
| KRH28821 | Soybean | peroxisome | 16.47 | 19.44 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G337100.2 | EnsemblPlantsGene:TraesCS6D01G337100 | PANTHER:PTHR33494 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr6D:+:437803180..437806118
Molecular Weight (calculated)
55778.2 Da
IEP (calculated)
6.252
GRAVY (calculated)
-0.479
Length
504 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQPRGRPRT KRRASHTETV APRASPAGAL EEEGSGDGNE ATQKRVRSWT AQPSQLPLPL QEFRTTKPPP LLLPPLQDMY VNIINEPLPL GLRLKKSPSF
101: VDLICMCLSK ENSTKENSTK EISTKENSTK EISTKGRSAM KDIVSKPPLK KDVVKASNFP ANFLKIGNWE YTSQYEGDLV AKCYYAKHKL VWEVLNDGLK
201: SKIEVQWLDI TAIKATCPEE GDGTLELMLS RPPIFFQETD PQPRKHTLWL AAPDFTCGQA IMCRRHVLRC SSSVLSRNFE KLIQCDERLN ELSRQPIIMS
301: DSPFIGNISS IFGNPNESSG PSSMFAHHVL PCDTSPVFQR DGVKHHQPLN LGATASDVQA KIVAQEQRNL NLCNHASPEV PKEFQEIAES LLSDTHAPPS
401: ADEKYLLARV DSLSNLIEKG AAPSTVSVPE RNYTIAAGEV GHDAFAEELG FCFEDEEQWA PAGRTVDGGA GPPAISRKES VAGLFENIHR RIPSMSELFD
501: IAED
101: VDLICMCLSK ENSTKENSTK EISTKENSTK EISTKGRSAM KDIVSKPPLK KDVVKASNFP ANFLKIGNWE YTSQYEGDLV AKCYYAKHKL VWEVLNDGLK
201: SKIEVQWLDI TAIKATCPEE GDGTLELMLS RPPIFFQETD PQPRKHTLWL AAPDFTCGQA IMCRRHVLRC SSSVLSRNFE KLIQCDERLN ELSRQPIIMS
301: DSPFIGNISS IFGNPNESSG PSSMFAHHVL PCDTSPVFQR DGVKHHQPLN LGATASDVQA KIVAQEQRNL NLCNHASPEV PKEFQEIAES LLSDTHAPPS
401: ADEKYLLARV DSLSNLIEKG AAPSTVSVPE RNYTIAAGEV GHDAFAEELG FCFEDEEQWA PAGRTVDGGA GPPAISRKES VAGLFENIHR RIPSMSELFD
501: IAED
001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED
Arabidopsis Description
ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.