CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44588	Soybean	cytosol	87.98	87.25
KRH28821	Soybean	peroxisome	58.43	81.97
HORVU0Hr1G040420.1	Barley	cytosol	15.69	54.97
PGSC0003DMT400036859	Potato	cytosol	45.41	52.61
Solyc03g117680.2.1	Tomato	cytosol	46.74	52.43
VIT_09s0018g01680.t01	Wine grape	cytosol	45.24	51.04
Os06t0186600-02	Rice	cytosol	32.39	49.74
HORVU3Hr1G034290.1	Barley	cytosol	39.07	49.37
KRH63129	Soybean	nucleus	43.24	48.59
KRH54987	Soybean	nucleus	42.9	48.22
GSMUA_Achr5P04640_001	Banana	nucleus	40.73	47.2
PGSC0003DMT400074432	Potato	nucleus	39.57	46.75
HORVU7Hr1G031130.2	Barley	nucleus	41.24	46.69
TraesCS7B01G055300.1	Wheat	cytosol	41.24	46.6
Os02t0793800-00	Rice	cytosol	22.54	46.55
TraesCS7A01G151300.1	Wheat	nucleus	40.9	45.97
TraesCS7D01G153200.1	Wheat	nucleus	40.57	45.59
GSMUA_Achr4P05930_001	Banana	cytosol	40.57	45.42
Zm00001d045084_P002	Maize	cytosol	40.73	45.35
KRH72344	Soybean	cytosol	40.23	45.05
KRH03001	Soybean	cytosol	37.06	45.03
Zm00001d037085_P005	Maize	nucleus	40.4	44.9
KXG19496	Sorghum	nucleus	39.9	44.59
Solyc06g068540.2.1	Tomato	cytosol	38.9	44.21
GSMUA_Achr9P22760_001	Banana	nucleus	39.07	43.98
KRH58482	Soybean	mitochondrion	29.05	43.61
KXG31260	Sorghum	cytosol	35.56	42.69
GSMUA_Achr4P12730_001	Banana	mitochondrion	40.73	41.85
Zm00001d052047_P001	Maize	nucleus	33.39	40.98
GSMUA_Achr4P11470_001	Banana	plasma membrane	35.89	38.12
KRG90540	Soybean	nucleus	15.86	34.05
TraesCS6A01G354900.1	Wheat	mitochondrion	27.21	33.75
KRH33824	Soybean	nucleus	15.69	33.1
TraesCS6B01G387700.1	Wheat	mitochondrion	26.38	32.78
TraesCS6D01G337100.2	Wheat	mitochondrion	25.71	30.56
KRH30889	Soybean	cytosol	12.35	30.08

Protein Annotations

EMBL:ACUP02004145	EnsemblPlants:KRH47309	EnsemblPlantsGene:GLYMA_07G021300	EntrezGene:100808320	PANTHER:PTHR33494	PANTHER:PTHR33494:SF1
ProteinID:KRH47309	ProteinID:KRH47309.1	SEG:seg	UniParc:UPI00023383B1	UniProt:I1KGQ7	MapMan:35.2

Description

hypothetical protein

Coordinates

chr7:+:1658940..1662247

Molecular Weight (calculated)

66009.6 Da

IEP (calculated)

6.017

GRAVY (calculated)

-0.585

Length

599 amino acids

Sequence
(BLAST)

001: MVQLMRSDTD NHCLKKVKLE VQDEIPPLHT HKRPKLESPP KCGASDESIS IPPASYNPLD EPSPLGLRLR KSPSLLDLIQ MRLSQQEESK KKDQKASSSS
101: SVAAAAAAAA DSKLKASNFP GTILKIGNWE YKSRYEGDLV AKCYFAKHKL VWEVLDGCLK NKIEIPWSDI MAIKANYPDD GPGTLEVVLA RRPLFFREIN
201: PQPRKHTLWQ ATSDFTGGQA GINRRHFLQC PQGLLGKHFE KLIQCDPRLN YLSQQADLVL DSPYFEPGTT SIHDHIESSD GFDRKSEERS GIFGLQDVES
301: GSAVQSSSSK SEHNLGKAVE NVSQEITSPS SVMNIHAMKD FRSRGAETLK FLSNLDQIKL PGLHPSMSMD DLVSHIGHCI SEQMGSDNPN FAGDNQYSRS
401: ILEEFTQYLF NDSQHATTSD EQRVMSKVNS LYCLLQKDPS TAEDMTKNGN SLGDANALSR VNSLYSLLQN AEDAMARNGN GLRDADVMSR VNSLYCLLQK
501: DPYTAEDTNT MTRNGNGLDA DEGGKVGVSN SNITELSQPC KTKVSDLEVQ ADDASGCKQG GTGMSRKESA GDLLLNLPRV ASLPQFLFNM SEDSVNKVR

Best Arabidopsis Sequence Match ( AT4G30780.1 )
(BLAST)

001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.