Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d040689_P001 | |
| Zm00001d052756_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24100.1 | Zm00001d040689_P001 | AT1G73720.1 | 21798944 |
| AT4G30780.1 | Zm00001d052756_P001 | AT5G22360.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG31260 | Sorghum | cytosol | 69.26 | 67.74 |
| HORVU0Hr1G040420.1 | Barley | cytosol | 22.13 | 63.16 |
| Zm00001d037085_P005 | Maize | nucleus | 54.3 | 49.17 |
| Zm00001d045084_P002 | Maize | cytosol | 53.89 | 48.88 |
| Os02t0793800-00 | Rice | cytosol | 28.89 | 48.62 |
| GSMUA_Achr5P04640_001 | Banana | nucleus | 44.06 | 41.59 |
| Bra039229.1-P | Field mustard | nucleus | 36.27 | 41.26 |
| CDY34799 | Canola | nucleus | 36.27 | 41.26 |
| CDX76839 | Canola | nucleus | 35.86 | 40.89 |
| TraesCS6A01G354900.1 | Wheat | mitochondrion | 40.16 | 40.58 |
| TraesCS6B01G387700.1 | Wheat | mitochondrion | 39.75 | 40.25 |
| PGSC0003DMT400036859 | Potato | cytosol | 42.21 | 39.85 |
| Solyc03g117680.2.1 | Tomato | cytosol | 43.44 | 39.7 |
| AT2G24100.1 | Thale cress | nucleus | 37.91 | 39.7 |
| KRH63129 | Soybean | nucleus | 42.83 | 39.21 |
| VIT_11s0037g00810.t01 | Wine grape | cytosol | 43.65 | 38.52 |
| KRH54987 | Soybean | nucleus | 42.01 | 38.46 |
| PGSC0003DMT400029158 | Potato | cytosol | 41.19 | 37.71 |
| KRH03001 | Soybean | cytosol | 37.91 | 37.53 |
| PGSC0003DMT400074432 | Potato | nucleus | 38.93 | 37.48 |
| Solyc07g005990.2.1 | Tomato | cytosol | 40.78 | 37.34 |
| TraesCS6D01G337100.2 | Wheat | mitochondrion | 38.32 | 37.1 |
| KRH72344 | Soybean | cytosol | 40.57 | 37.01 |
| VIT_09s0018g01680.t01 | Wine grape | cytosol | 40.16 | 36.91 |
| Solyc06g068540.2.1 | Tomato | cytosol | 37.5 | 34.72 |
| KRH58482 | Soybean | mitochondrion | 28.28 | 34.59 |
| Bra024044.1-P | Field mustard | nucleus | 39.96 | 34.33 |
| CDY23256 | Canola | nucleus | 37.7 | 34.14 |
| CDY39241 | Canola | cytosol | 39.55 | 34.04 |
| Bra010274.1-P | Field mustard | cytosol | 38.11 | 33.45 |
| CDY36470 | Canola | nucleus | 37.91 | 33.39 |
| KRH47309 | Soybean | nucleus | 40.98 | 33.39 |
| KRH44588 | Soybean | cytosol | 41.19 | 33.28 |
| CDX72268 | Canola | nucleus | 38.52 | 33.22 |
| CDX68693 | Canola | cytosol | 37.5 | 32.97 |
| CDY28207 | Canola | cytosol | 11.27 | 32.35 |
| Bra011214.1-P | Field mustard | cytosol | 11.27 | 32.35 |
| Bra011221.1-P | Field mustard | nucleus | 37.7 | 32.34 |
| CDY28214 | Canola | cytosol | 37.7 | 32.17 |
| AT4G30780.1 | Thale cress | nucleus | 38.52 | 31.92 |
| KRH28821 | Soybean | peroxisome | 23.98 | 27.4 |
Protein Annotations
| EnsemblPlants:Zm00001d052047_P001 | EnsemblPlants:Zm00001d052047_T001 | EnsemblPlantsGene:Zm00001d052047 | EntrezGene:103654180 | PANTHER:PTHR33494 | PANTHER:PTHR33494:SF1 |
| ProteinID:AQK55877.1 | SEG:seg | UniParc:UPI0004DEB303 | UniProt:A0A1D6QCC7 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr4:-:177540276..177544151
Molecular Weight (calculated)
53761.6 Da
IEP (calculated)
6.203
GRAVY (calculated)
-0.564
Length
488 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQLPGSKKR HAEMATAATV KAEVEGLGCG DGSPHKHVKP MPQPPPQPPP PEDLPFDVLD GPSPLGLRLR KSRSLVDLIQ CKLFQDKSAH EQFDGHNNVS
101: DTPMKKEVRS GAPTAGERMK ASNFPANVLR IGSWEYISHY EGDLVAKCYF AKHKLVWEVL HNGLKSKIEI QWSDIIALKA TCPENEQEGV LDLVLARPPL
201: FFKETDPQPR KHTLWQAASD FTDGQASSKR RHILRCPSSL LSRNFEKLIQ CDQRLRELSQ QPAAILQNPG FEPKRSIFQN PNESKDCLDI GGLKFEHKAT
301: LPKFTAPLST RVFSSLSNNV GRPINIGFGA GHFGGNVPEE SKNCNQWNQL IVPGLEALQG DERSAGGPPL TTNDAISKKA WEDLVQHLFS DTPSLPALDD
401: NNLTSRVDSL YSLLEKDTAP PAMRDPECSS DGGDIGAIQV DSDGFKGRLD PSPPGISRND SLDELLLNLP KIASIPQFLF NRTEDSDE
101: DTPMKKEVRS GAPTAGERMK ASNFPANVLR IGSWEYISHY EGDLVAKCYF AKHKLVWEVL HNGLKSKIEI QWSDIIALKA TCPENEQEGV LDLVLARPPL
201: FFKETDPQPR KHTLWQAASD FTDGQASSKR RHILRCPSSL LSRNFEKLIQ CDQRLRELSQ QPAAILQNPG FEPKRSIFQN PNESKDCLDI GGLKFEHKAT
301: LPKFTAPLST RVFSSLSNNV GRPINIGFGA GHFGGNVPEE SKNCNQWNQL IVPGLEALQG DERSAGGPPL TTNDAISKKA WEDLVQHLFS DTPSLPALDD
401: NNLTSRVDSL YSLLEKDTAP PAMRDPECSS DGGDIGAIQV DSDGFKGRLD PSPPGISRND SLDELLLNLP KIASIPQFLF NRTEDSDE
001: MNFPISTIRI GGWVVVAKNP DDIVAKFYFA KKKLIWEFLF GEPETNTLRL KRKIEIQWND VSSFEESISS RDETGILKIE LKKRPTFFIE TNPQAGKHTQ
101: WKQLDHDFTG DHASNYRRHT LHFPPGVLQK NLEKLVTDSF WSKLYEVPFP VHESRYFDSG FENNSSRNSH SHTVGFNVNN GPQHHFSQGI GGVGVGEGNF
201: SMANGGWQRN SYSPVNSLNY NTANEFFGMQ ATPPSSQVVN EHYNTQNDFT GSQFGYHMNQ DEIQKILESQ AYAVPDTQTK LMSSAMNNVP KYPQAGSCLE
301: SMLFWYEHRR RFQQ
101: WKQLDHDFTG DHASNYRRHT LHFPPGVLQK NLEKLVTDSF WSKLYEVPFP VHESRYFDSG FENNSSRNSH SHTVGFNVNN GPQHHFSQGI GGVGVGEGNF
201: SMANGGWQRN SYSPVNSLNY NTANEFFGMQ ATPPSSQVVN EHYNTQNDFT GSQFGYHMNQ DEIQKILESQ AYAVPDTQTK LMSSAMNNVP KYPQAGSCLE
301: SMLFWYEHRR RFQQ
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05770.1); Has 107 Blast hits to 107 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 13 (sou /.../CBI BLink). [Source:TAIR;Acc:AT1G54300]
SUBAcon: [vacuole,nucleus,cytosol]
SUBAcon: [vacuole,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.