CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70999
CDX88799
CDY09133

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30780.1	CDX70999	AT5G22360.1	21798944
AT4G30780.1	CDX88799	AT5G22360.1	21798944
AT4G30780.1	CDY09133	AT5G22360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010274.1-P	Field mustard	cytosol	98.33	95.32
CDY36470	Canola	nucleus	88.5	86.1
CDY39241	Canola	cytosol	80.33	76.37
CDX68693	Canola	cytosol	76.62	74.41
CDY28214	Canola	cytosol	77.74	73.25
CDX72268	Canola	nucleus	76.44	72.79
AT4G30780.1	Thale cress	nucleus	75.32	68.93
CDY34799	Canola	nucleus	48.42	60.84
CDX76839	Canola	nucleus	46.94	59.11
HORVU0Hr1G040420.1	Barley	cytosol	18.37	57.89
CDY28207	Canola	cytosol	16.7	52.94
KRH63129	Soybean	nucleus	47.31	47.84
KRH54987	Soybean	nucleus	46.94	47.47
VIT_11s0037g00810.t01	Wine grape	cytosol	48.42	47.2
Os06t0186600-02	Rice	cytosol	32.84	45.38
HORVU3Hr1G034290.1	Barley	cytosol	39.89	45.36
Os02t0793800-00	Rice	cytosol	23.93	44.48
KRH03001	Soybean	cytosol	40.26	44.02
Solyc07g005990.2.1	Tomato	cytosol	43.23	43.71
PGSC0003DMT400029158	Potato	cytosol	42.67	43.15
KRH72344	Soybean	cytosol	42.67	42.99
HORVU7Hr1G031130.2	Barley	nucleus	42.12	42.91
TraesCS7B01G055300.1	Wheat	cytosol	41.56	42.26
TraesCS7A01G151300.1	Wheat	nucleus	41.56	42.03
KXG19496	Sorghum	nucleus	41.74	41.98
TraesCS7D01G153200.1	Wheat	nucleus	41.37	41.84
Zm00001d045084_P002	Maize	cytosol	41.74	41.82
Zm00001d037085_P005	Maize	nucleus	41.56	41.56
GSMUA_Achr9P22760_001	Banana	nucleus	41.0	41.54
GSMUA_Achr4P05930_001	Banana	cytosol	39.89	40.19
KRH58482	Soybean	mitochondrion	29.5	39.85
GSMUA_Achr5P04640_001	Banana	nucleus	37.48	39.07
KXG31260	Sorghum	cytosol	35.99	38.88
GSMUA_Achr4P12730_001	Banana	mitochondrion	41.56	38.42
Zm00001d052047_P001	Maize	nucleus	34.14	37.7
GSMUA_Achr4P11470_001	Banana	plasma membrane	38.22	36.52
TraesCS6B01G387700.1	Wheat	mitochondrion	30.24	33.82
CDY22822	Canola	nucleus	15.03	32.93
TraesCS6A01G354900.1	Wheat	mitochondrion	29.13	32.51
CDY25203	Canola	cytosol	14.29	31.95
TraesCS6D01G337100.2	Wheat	mitochondrion	29.5	31.55
CDY14664	Canola	cytosol	17.44	23.15
CDY05199	Canola	nucleus	16.33	21.95
CDX74132	Canola	cytosol	15.96	21.45
CDY27740	Canola	plastid	16.88	17.84

Protein Annotations

EnsemblPlants:CDY23256	EnsemblPlantsGene:GSBRNA2T00021815001	PANTHER:PTHR33494	PANTHER:PTHR33494:SF1	ProteinID:CDY23256	ProteinID:CDY23256.1
UniParc:UPI0004EDE452	UniProt:A0A078GCZ4	MapMan:35.2	:	:	:

Description

BnaA08g12900DBnaA08g12900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCZ4]

Coordinates

chrLK032142:+:91755..94045

Molecular Weight (calculated)

59305.9 Da

IEP (calculated)

5.968

GRAVY (calculated)

-0.524

Length

539 amino acids

Sequence
(BLAST)

001: MRPESKSAAK CRDELPVKLE IAEDGLEEEH GPLNKRSKLW SSSPMAPAKY SPFDGPSPLG LSLRKSPSLL DLIQMRLTQS GDPKAGGSGG SIEKLKASNF
101: PASVLKIGQW EYKSRYEGDL VAKCYFAKHK LVWEVLERGL KSKIEIQWSD IVGLKANCPE KGPGTLTLLL SRQPLFFRET NPQPRKHTLW QATSDFTDGQ
201: ASMYRKHFLQ CAEGIMNKHL EKLVQCDHRL LYLSRESEII MDSPCFDARR SIFEDPSEST KGNNPFGSFN LSKAPSVSGT RNLASPVGAQ SSSEHMYLSH
301: EAPSPSSDAR ANEAVNSRNT TDCGQMGGLR QSMSLSDFLA VLCDPKDTSD SSQVEEVAGL HQSMSVSDFL AVLSDSGNIT DSSQIKVPGL QQSMSVSDFV
401: GLLSDSAVGN HPEHMENFNG MKQQLLSDNI QFDAPQDEKS LMPRVDSLFN LLYKDLNGAA NSQLNTEVSV GLKSELSDLK GIVPDNNNNR VLDPASSSRP
501: QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDSDAYNR

Best Arabidopsis Sequence Match ( AT2G24100.1 )
(BLAST)

001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.