Factsheet for GSMUA_Achr4P11470_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 5
golgi 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr6P25450_001
GSMUA_Achr9P08610_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24100.1	GSMUA_Achr6P25450_001	AT1G73720.1	21798944
AT2G24100.1	GSMUA_Achr9P08610_001	AT1G73720.1	21798944
AT4G30780.1	GSMUA_Achr10P...	AT5G22360.1	21798944
AT4G30780.1	GSMUA_Achr11P...	AT5G22360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P05930_001	Banana	cytosol	52.84	55.7
GSMUA_Achr9P22760_001	Banana	nucleus	51.6	54.7
GSMUA_Achr4P12730_001	Banana	mitochondrion	53.72	51.97
CDX76839	Canola	nucleus	35.82	47.2
CDY34799	Canola	nucleus	35.82	47.09
Bra039229.1-P	Field mustard	nucleus	35.82	47.09
VIT_11s0037g00810.t01	Wine grape	cytosol	45.04	45.93
AT2G24100.1	Thale cress	nucleus	36.35	43.99
GSMUA_Achr5P04640_001	Banana	nucleus	40.25	43.91
KRH63129	Soybean	nucleus	41.49	43.9
Solyc03g117680.2.1	Tomato	cytosol	41.13	43.45
KRH54987	Soybean	nucleus	40.96	43.34
PGSC0003DMT400036859	Potato	cytosol	39.54	43.13
Solyc07g005990.2.1	Tomato	cytosol	40.6	42.96
PGSC0003DMT400029158	Potato	cytosol	40.6	42.96
Bra011214.1-P	Field mustard	cytosol	12.59	41.76
CDY28207	Canola	cytosol	12.59	41.76
KRH03001	Soybean	cytosol	36.35	41.58
VIT_09s0018g01680.t01	Wine grape	cytosol	38.83	41.24
KRH72344	Soybean	cytosol	38.3	40.37
PGSC0003DMT400074432	Potato	nucleus	35.64	39.65
Solyc06g068540.2.1	Tomato	cytosol	35.82	38.33
CDY36470	Canola	nucleus	37.59	38.27
CDY23256	Canola	nucleus	36.52	38.22
Bra024044.1-P	Field mustard	nucleus	38.3	38.03
CDX68693	Canola	cytosol	37.23	37.84
Bra010274.1-P	Field mustard	cytosol	37.23	37.77
CDY39241	Canola	cytosol	37.94	37.74
CDX72268	Canola	nucleus	37.59	37.46
CDY28214	Canola	cytosol	37.77	37.24
Bra011221.1-P	Field mustard	nucleus	37.41	37.08
KRH44588	Soybean	cytosol	39.18	36.59
AT4G30780.1	Thale cress	nucleus	37.94	36.33
KRH47309	Soybean	nucleus	38.12	35.89
KRH58482	Soybean	mitochondrion	24.65	34.84
KRH28821	Soybean	peroxisome	21.28	28.1
GSMUA_Achr11P...	Banana	cytosol	13.12	21.89

Protein Annotations

EnsemblPlants:GSMUA_Achr4P11470_001	EnsemblPlants:GSMUA_Achr4T11470_001	EnsemblPlantsGene:GSMUA_Achr4G11470_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33494	PANTHER:PTHR33494:SF1	PFscan:PS51257	SEG:seg	TMHMM:TMhelix	UniParc:UPI000294A62F
UniProt:M0SN12	MapMan:35.2	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G11470_001]

Coordinates

chr4:-:8270651..8275429

Molecular Weight (calculated)

62316.6 Da

IEP (calculated)

6.250

GRAVY (calculated)

-0.445

Length

564 amino acids

Sequence
(BLAST)

001: MARVRQLTES TSCPIILLAC VISSSCLPTS SSSADTSRFS TRISWAVLFG PFLSLSFFFV CLGGSLMVHL ASYGKLHSEA ELPIKKRLPP PQPQPPSSKV
101: KLEIEDQLED QHGPLNKRPK VADPHLQQQW GTGKDMPLTE GVQYDLLDEP SPLGLRLRKS PSLLDLIQMR LSQANAAVTS HSMENEGLGD EKNKETRSSS
201: ALATTEKMKA SNFPASILRI GSWEYVSRYE GDLVAKCYFA KRKLVWEILE GGLKSKIEIQ WSDITALKAN CPEDGPGTLD VVSARQPLFF RETNPQPRKH
301: TLWQATSDFT DGQASIHRKH FLQCPQGLLS KHLEKLIQYD PRLYALSQEP EIQESRFFEP RCYPFDNLKD SYGSSVQEFQ DSASACARRS TSAKGGTSVD
401: VSVAEIHPPS SGSFGTQFCV RMYLFLEPPV SKGNSAVGTE ETKNQSCWDH LTVPGLKPSM SINDFINQLG YCISDQFASR NPLSSGTDAG MVQSQQMNWG
501: GTSTTGNGFD PEEESNEASG RRTAANISRK DSFGELLMHL PRIASLPQFL FDIAEDGEDI GSQK

Best Arabidopsis Sequence Match ( AT2G24100.1 )
(BLAST)

001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.