Factsheet for Bra011221.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006623.1-P
Bra020187.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30780.1	Bra006623.1-P	AT5G22360.1	21798944
AT4G30780.1	Bra020187.1-P	AT5G22360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28214	Canola	cytosol	98.07	97.55
Bra011214.1-P	Field mustard	cytosol	24.96	83.53
Bra024044.1-P	Field mustard	nucleus	82.78	82.92
AT4G30780.1	Thale cress	nucleus	79.79	77.08
Bra010274.1-P	Field mustard	cytosol	75.04	76.8
Bra039229.1-P	Field mustard	nucleus	47.63	63.17
HORVU0Hr1G040420.1	Barley	cytosol	17.4	57.89
KRH63129	Soybean	nucleus	46.92	50.09
KRH54987	Soybean	nucleus	46.22	49.34
VIT_11s0037g00810.t01	Wine grape	cytosol	47.1	48.46
KRH03001	Soybean	cytosol	40.07	46.25
Os06t0186600-02	Rice	cytosol	31.28	45.64
HORVU3Hr1G034290.1	Barley	cytosol	37.79	45.36
KRH72344	Soybean	cytosol	41.83	44.49
Os02t0793800-00	Rice	cytosol	22.67	44.48
Solyc07g005990.2.1	Tomato	cytosol	41.65	44.47
PGSC0003DMT400029158	Potato	cytosol	41.12	43.9
GSMUA_Achr5P04640_001	Banana	nucleus	39.19	43.13
HORVU7Hr1G031130.2	Barley	nucleus	39.89	42.91
KXG19496	Sorghum	nucleus	40.42	42.91
GSMUA_Achr9P22760_001	Banana	nucleus	40.07	42.86
Zm00001d037085_P005	Maize	nucleus	40.6	42.86
TraesCS7A01G151300.1	Wheat	nucleus	40.07	42.78
TraesCS7B01G055300.1	Wheat	cytosol	39.72	42.64
TraesCS7D01G153200.1	Wheat	nucleus	39.54	42.21
Zm00001d045084_P002	Maize	cytosol	39.89	42.19
GSMUA_Achr4P05930_001	Banana	cytosol	39.37	41.87
KXG31260	Sorghum	cytosol	34.8	39.68
GSMUA_Achr4P12730_001	Banana	mitochondrion	40.07	39.11
KRH58482	Soybean	mitochondrion	27.42	39.1
Zm00001d052047_P001	Maize	nucleus	32.34	37.7
GSMUA_Achr4P11470_001	Banana	plasma membrane	37.08	37.41
Bra018890.1-P	Field mustard	nucleus	15.11	34.96
TraesCS6B01G387700.1	Wheat	mitochondrion	28.82	34.02
TraesCS6A01G354900.1	Wheat	mitochondrion	28.47	33.54
TraesCS6D01G337100.2	Wheat	mitochondrion	27.94	31.55
Bra001166.1-P	Field mustard	mitochondrion	7.91	25.0
Bra039411.1-P	Field mustard	plastid	16.7	18.59
Bra001165.1-P	Field mustard	mitochondrion	6.33	15.65

Protein Annotations

EnsemblPlants:Bra011221.1	EnsemblPlants:Bra011221.1-P	EnsemblPlantsGene:Bra011221	PANTHER:PTHR33494	PANTHER:PTHR33494:SF1	SEG:seg
UniParc:UPI0002546D84	UniProt:M4D417	MapMan:35.2	:	:	:

Description

AT4G30780 (E=4e-257) | unknown protein

Coordinates

chrA01:-:3246023..3248183

Molecular Weight (calculated)

61976.1 Da

IEP (calculated)

6.129

GRAVY (calculated)

-0.470

Length

569 amino acids

Sequence
(BLAST)

001: MRKSGVTKPD SELASKCRDE LPVKLEIAED DLEEAHGPLN KRSKLWSSGT SSSSMAPAKY NPLDEPSPLG LSLRKSPSLL DLIQMRLTQK AADAVGSGVK
101: KESKCITAAS AGATLASGSI EKLKASNFPA TVLKIGKWEY KSRYEGDLVA KCYFAKHKLV WEVLEQGLKS KIEIQWSDIV GLQAKCPEDG PGTLTLLLSR
201: QPLFFRETNP QPRKHTLWQA TSDFTDGQAS MYRLHFLQCA QGIMNKHFEK LVQCDHRLFH LSREPEIKMD SPCFDARPSI FEDPSESKGY PYGNLNLSTG
301: PSISGTHNLA SPVGAQSSSE HMYLSHEAPS PSSVIDARGN EGTGGVETVN SRNTTDCGQM GAPGLRQSMS LNDFLAVLCD SDNTTHPNQV ENAAGVHPSM
401: SVSDLVAFLS TDSSQLKVPG LQQSISVSDF VGLLSDSAGG NHPEHLEKFE SLKQQLLSDN IQFDTPDEKS LMPRVNSLFN LLYKDPNVAA NSQLNTEIPV
501: GLKSELNDLN GTVSANNNNR VLDPASSSKP QGGMLRKDSF SDLLLHLPRI TSLPKFLSNI SEEDGDAYK

Best Arabidopsis Sequence Match ( AT4G30780.1 )
(BLAST)

001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.