CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25265
KRH30399
KRH43068
KRH59198
KRH62407
KRH63018
KRH71579

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24100.1	KRH43068	AT1G73720.1	21798944
AT2G24100.1	KRH59198	AT1G73720.1	21798944
AT2G24100.1	KRH62407	AT1G73720.1	21798944
AT2G24100.1	KRH63018	AT1G73720.1	21798944
AT2G24100.1	KRH71579	AT1G73720.1	21798944
AT4G30780.1	KRH25265	AT5G22360.1	21798944
AT4G30780.1	KRH30399	AT5G22360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58482	Soybean	mitochondrion	63.36	84.96
KRH03001	Soybean	cytosol	70.65	76.67
KRH63129	Soybean	nucleus	64.86	65.1
KRH54987	Soybean	nucleus	63.36	63.6
VIT_11s0037g00810.t01	Wine grape	cytosol	56.07	54.25
HORVU0Hr1G040420.1	Barley	cytosol	17.01	53.22
PGSC0003DMT400029158	Potato	cytosol	50.47	50.66
Solyc07g005990.2.1	Tomato	cytosol	50.47	50.66
AT2G24100.1	Thale cress	nucleus	42.99	49.36
Os06t0186600-02	Rice	cytosol	35.14	48.21
CDX76839	Canola	nucleus	38.13	47.66
CDY34799	Canola	nucleus	37.94	47.32
Bra039229.1-P	Field mustard	nucleus	37.94	47.32
HORVU3Hr1G034290.1	Barley	cytosol	41.87	47.26
GSMUA_Achr5P04640_001	Banana	nucleus	45.23	46.81
GSMUA_Achr9P22760_001	Banana	nucleus	46.17	46.43
Os02t0793800-00	Rice	cytosol	25.05	46.21
GSMUA_Achr4P05930_001	Banana	cytosol	45.79	45.79
CDY28207	Canola	cytosol	14.39	45.29
Bra011214.1-P	Field mustard	cytosol	14.39	45.29
Zm00001d045084_P002	Maize	cytosol	45.42	45.17
TraesCS7B01G055300.1	Wheat	cytosol	44.11	44.53
Zm00001d037085_P005	Maize	nucleus	44.67	44.34
HORVU7Hr1G031130.2	Barley	nucleus	43.74	44.23
KXG19496	Sorghum	nucleus	44.11	44.03
TraesCS7D01G153200.1	Wheat	nucleus	42.99	43.15
TraesCS7A01G151300.1	Wheat	nucleus	42.99	43.15
CDY39241	Canola	cytosol	45.61	43.03
Bra024044.1-P	Field mustard	nucleus	45.61	42.96
AT4G30780.1	Thale cress	nucleus	47.29	42.95
CDY23256	Canola	nucleus	42.99	42.67
CDX72268	Canola	nucleus	45.05	42.58
CDX68693	Canola	cytosol	43.93	42.34
Bra010274.1-P	Field mustard	cytosol	43.74	42.09
Bra011221.1-P	Field mustard	nucleus	44.49	41.83
CDY28214	Canola	cytosol	44.67	41.78
CDY36470	Canola	nucleus	43.18	41.7
KXG31260	Sorghum	cytosol	38.88	41.68
GSMUA_Achr4P12730_001	Banana	mitochondrion	45.05	41.34
Zm00001d052047_P001	Maize	nucleus	37.01	40.57
KRH47309	Soybean	nucleus	45.05	40.23
KRH44588	Soybean	cytosol	45.23	40.07
GSMUA_Achr4P11470_001	Banana	plasma membrane	40.37	38.3
KRH28821	Soybean	peroxisome	27.1	33.96
TraesCS6B01G387700.1	Wheat	mitochondrion	29.72	32.99
TraesCS6A01G354900.1	Wheat	mitochondrion	29.53	32.71
TraesCS6D01G337100.2	Wheat	mitochondrion	28.97	30.75
KRG90540	Soybean	nucleus	15.33	29.39
KRH33824	Soybean	nucleus	15.51	29.23
KRH30889	Soybean	cytosol	12.9	28.05

Protein Annotations

EMBL:ACUP02001203	EnsemblPlants:KRH72344	EnsemblPlantsGene:GLYMA_02G206600	EntrezGene:100794550	PANTHER:PTHR33494	PANTHER:PTHR33494:SF1
ProteinID:KRH72344	ProteinID:KRH72344.1	SEG:seg	UniParc:UPI0001BA852B	UniProt:I1JGS7	MapMan:35.2

Description

hypothetical protein

Coordinates

chr2:-:39162639..39166518

Molecular Weight (calculated)

59691.4 Da

IEP (calculated)

5.289

GRAVY (calculated)

-0.548

Length

535 amino acids

Sequence
(BLAST)

001: MVQVMGFRKL RSDLETVPFK LEIEEPLQEE HAPLNKRFKS SSTSQEQWNA SNSASSSSPS QYNILDEPSP LGLRLRKSPS LLDLIEMKLS QGNVIIANTQ
101: NENFLSSGLK KESRGAAASD SVEKLKASNF PASLLRIGSW EYKSKHEGDL VAKCYFAKHK LVWEVLEGEL KNKMEIQWSD IMALKANCPD TGPSSLTVVL
201: ARQPLFFKET NPQPRKHTIW QATSDFTEGE ACKHRQHFLE FPQGLLAKHF EKLIQCDTHL NFLSQQPEII LDSPHFDTRP AAFENLDNPE DLDLHLVNCK
301: GSTTSCLQDI GSPHSSLSPS FKIEHNDLLG IASDNLPCEA PFPSSGSTSS ETDFKGPRNW DQIKLPGLRP SMAVSDFIGH IEHCLSEQIT SGNPSFCGGR
401: PEFQEMLEEI AQHLLNDNKV ITTSDEKSLM TRVNSLCCLL QKDPAALQSS HDKESADEGP ADGKSIQLSH DLESMQNNKI KMDVKASEEE FRDVSRGKQT
501: LGMPRKDSLG ELLLQLPRIA SLSKFLFDIS EDSDN

Best Arabidopsis Sequence Match ( AT4G30780.1 )
(BLAST)

001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.