CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70999
CDX88799
CDY09133

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30780.1	CDX70999	AT5G22360.1	21798944
AT4G30780.1	CDX88799	AT5G22360.1	21798944
AT4G30780.1	CDY09133	AT5G22360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39241	Canola	cytosol	90.28	90.12
Bra024044.1-P	Field mustard	nucleus	89.75	89.44
CDY28214	Canola	cytosol	80.21	79.37
CDX68693	Canola	cytosol	77.56	79.1
CDY23256	Canola	nucleus	72.79	76.44
CDY36470	Canola	nucleus	73.14	74.73
AT4G30780.1	Thale cress	nucleus	76.86	73.85
CDY28207	Canola	cytosol	19.96	66.47
CDY34799	Canola	nucleus	46.47	61.31
CDX76839	Canola	nucleus	45.41	60.05
HORVU0Hr1G040420.1	Barley	cytosol	17.31	57.31
KRH63129	Soybean	nucleus	47.0	49.91
KRH54987	Soybean	nucleus	45.94	48.78
VIT_11s0037g00810.t01	Wine grape	cytosol	47.17	48.28
KRH03001	Soybean	cytosol	40.11	46.04
Solyc07g005990.2.1	Tomato	cytosol	43.11	45.78
PGSC0003DMT400029158	Potato	cytosol	42.93	45.59
Os02t0793800-00	Rice	cytosol	23.14	45.17
KRH72344	Soybean	cytosol	42.58	45.05
HORVU3Hr1G034290.1	Barley	cytosol	37.28	44.51
Os06t0186600-02	Rice	cytosol	30.57	44.36
GSMUA_Achr9P22760_001	Banana	nucleus	40.28	42.86
GSMUA_Achr4P05930_001	Banana	cytosol	39.93	42.24
HORVU7Hr1G031130.2	Barley	nucleus	39.4	42.16
Zm00001d037085_P005	Maize	nucleus	40.11	42.12
KXG19496	Sorghum	nucleus	39.75	41.98
TraesCS7B01G055300.1	Wheat	cytosol	39.22	41.89
Zm00001d045084_P002	Maize	cytosol	39.75	41.82
GSMUA_Achr5P04640_001	Banana	nucleus	38.16	41.78
TraesCS7A01G151300.1	Wheat	nucleus	39.05	41.46
TraesCS7D01G153200.1	Wheat	nucleus	38.69	41.09
KXG31260	Sorghum	cytosol	35.87	40.68
GSMUA_Achr4P12730_001	Banana	mitochondrion	41.34	40.14
KRH58482	Soybean	mitochondrion	27.92	39.6
Zm00001d052047_P001	Maize	nucleus	33.22	38.52
GSMUA_Achr4P11470_001	Banana	plasma membrane	37.46	37.59
CDY22822	Canola	nucleus	15.55	35.77
TraesCS6B01G387700.1	Wheat	mitochondrion	29.68	34.85
CDY25203	Canola	cytosol	14.66	34.44
TraesCS6A01G354900.1	Wheat	mitochondrion	28.98	33.95
TraesCS6D01G337100.2	Wheat	mitochondrion	28.45	31.94
CDY14664	Canola	cytosol	17.49	24.38
CDX74132	Canola	cytosol	16.61	23.44
CDY05199	Canola	nucleus	16.25	22.94
CDY27740	Canola	plastid	15.37	17.06

Protein Annotations

EnsemblPlants:CDX72268	EnsemblPlantsGene:GSBRNA2T00099740001	PANTHER:PTHR33494	PANTHER:PTHR33494:SF1	ProteinID:CDX72268	ProteinID:CDX72268.1
SEG:seg	UniParc:UPI0004EEE8AC	MapMan:35.2	:	:	:

Description

BnaC07g42900D

Coordinates

chrLK031796:+:356147..358654

Molecular Weight (calculated)

62281.3 Da

IEP (calculated)

5.524

GRAVY (calculated)

-0.464

Length

566 amino acids

Sequence
(BLAST)

001: MVEMRRSESE SSAKCRAEFP VKLEIVEDDL EEEHASLNKR SRLWSCGTSS SPMAPAMYNP LDEPSPLGLS LRKSPSLLDL IQMRLTQSGD SKAETMQTTG
101: VKKESKCITA ASAGATLAPG SIEKLKASNF PASVLKIGKW EYKSRYEGDL VAKCYFAKHK LVWEVLEQGL KSKIEIQWSD IVGLKANCPE DGPGTLTLVL
201: SRQPLFFRET NPQPRKHTLW QATSDFTDGQ ASLYRKHFLQ CAQGIMNKHF EKLVQCDHRL FHLSRVPEII MDFPYFDARQ SIFEDPSERK GYPYGNLNLG
301: IGPSIASPVG AQSSSEHMYL SHEAPSPSSD ARANEGTGGA EAVNSRNTTD CGQIGLHKAI SLSDFLAVLG DSKKNTTDSY QVEEEAGVNQ SMSVSDLVAF
401: LSDSRNITDS SQIKVPGLQQ SISVSDFVGL LSDSAGGNHP EDMEKFEILK QQLLSDNIQF DTPDEKSLMP RVNSLFNLLY KEPNVAANSQ VNTEVSVGFK
501: SELHDLNGTV SANSNSNRVV DPASSSKPQG LLRKDSFSDL LLHLPRITSL PKFLSNISEE DGDAYK

Best Arabidopsis Sequence Match ( AT4G30780.1 )
(BLAST)

001: MVEMRKSGGL RPESESAARC RDELPVKLEI AEDDLEEEHG PLNKRSRLWS PGTSSSTMAP AKYNPLDEPS PLGLSLKKSP SLLELIQMKI THCGDPKAAE
101: TLKAGALGSG LKRESKTIAA AASVGPTLAP GSIEKLKASN FPASLLKIGQ WEYKSRYEGD LVAKCYFAKH KLVWEVLEQG LKSKIEIQWS DIMALKANCP
201: EDGPGTLTLV LARQPLFFRE TNPQPRKHTL WQATSDFTDG QASMNRQHFL QCAQGIMNKH FEKLVQCDHR LFHLSRQPEI AIDSPYFDAR QSIFEDPSES
301: KGHPFGNLNL STGPSISGTQ NLASPVGAQS SSEHMYLSHE APSPSSVIDA RANEGIGGSE AVNSRNRTDC GQIEAPGIHQ SMSLSDFLAV LCDTKNTTDL
401: NLADDVDGLH QSMSVSDFVA YLSDSRNITD SDQIKVPGLH QSMSVSDFVG LLSDSAGGSH PEHMEKFEIM KQQLLSDNIQ FEAPDEKSLM PRVNSLFNLL
501: YKDPNVAANS QLNTEMSVGL KSEPKGIVSD NNNNNNNNNR VLDTASSSKP QGMLRKDSFS DLLLHLPRIT SLPKFLSNIS EEDGDAYNR

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9SUG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.