Factsheet for PGSC0003DMT400029158

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400013292
PGSC0003DMT400015063

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24100.1	PGSC0003DMT400013292	AT1G73720.1	21798944
AT4G30780.1	PGSC0003DMT400015063	AT5G22360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g005990.2.1	Tomato	cytosol	94.93	94.93
VIT_11s0037g00810.t01	Wine grape	cytosol	58.35	56.24
HORVU0Hr1G040420.1	Barley	cytosol	17.64	54.97
KRH63129	Soybean	nucleus	53.28	53.28
PGSC0003DMT400036859	Potato	cytosol	51.41	53.0
Bra039229.1-P	Field mustard	nucleus	42.21	52.45
KRH54987	Soybean	nucleus	52.35	52.35
CDY34799	Canola	nucleus	42.03	52.21
CDX76839	Canola	nucleus	41.84	52.1
KRH72344	Soybean	cytosol	50.66	50.47
AT2G24100.1	Thale cress	nucleus	44.09	50.43
Os06t0186600-02	Rice	cytosol	36.59	50.0
KRH03001	Soybean	cytosol	45.03	48.68
GSMUA_Achr5P04640_001	Banana	nucleus	47.09	48.55
HORVU3Hr1G034290.1	Barley	cytosol	43.15	48.52
KRH58482	Soybean	mitochondrion	35.46	47.37
PGSC0003DMT400074432	Potato	nucleus	44.84	47.14
GSMUA_Achr4P05930_001	Banana	cytosol	47.09	46.92
Zm00001d045084_P002	Maize	cytosol	47.28	46.84
KXG19496	Sorghum	nucleus	47.09	46.83
GSMUA_Achr9P22760_001	Banana	nucleus	46.72	46.8
Zm00001d037085_P005	Maize	nucleus	46.72	46.2
HORVU7Hr1G031130.2	Barley	nucleus	45.59	45.94
Os02t0793800-00	Rice	cytosol	24.95	45.86
TraesCS7B01G055300.1	Wheat	cytosol	45.4	45.66
TraesCS7D01G153200.1	Wheat	nucleus	44.84	44.84
GSMUA_Achr4P12730_001	Banana	mitochondrion	48.97	44.77
TraesCS7A01G151300.1	Wheat	nucleus	44.65	44.65
Bra024044.1-P	Field mustard	nucleus	46.53	43.66
CDY39241	Canola	cytosol	46.15	43.39
CDX72268	Canola	nucleus	45.59	42.93
CDY23256	Canola	nucleus	43.15	42.67
CDX68693	Canola	cytosol	44.28	42.52
KXG31260	Sorghum	cytosol	39.59	42.28
AT4G30780.1	Thale cress	nucleus	46.53	42.11
CDY36470	Canola	nucleus	43.53	41.88
Bra010274.1-P	Field mustard	cytosol	43.34	41.55
CDY28214	Canola	cytosol	44.28	41.26
Zm00001d052047_P001	Maize	nucleus	37.71	41.19
Bra011221.1-P	Field mustard	nucleus	43.9	41.12
GSMUA_Achr4P11470_001	Banana	plasma membrane	42.96	40.6
CDY28207	Canola	cytosol	12.2	38.24
Bra011214.1-P	Field mustard	cytosol	12.2	38.24
TraesCS6B01G387700.1	Wheat	mitochondrion	31.33	34.65
TraesCS6A01G354900.1	Wheat	mitochondrion	31.14	34.37
TraesCS6D01G337100.2	Wheat	mitochondrion	30.39	32.14
PGSC0003DMT400007166	Potato	nucleus	25.14	22.67

Protein Annotations

EnsemblPlants:PGSC0003DMT400029158	EnsemblPlantsGene:PGSC0003DMG400011210	EntrezGene:102599998	PANTHER:PTHR33494	PANTHER:PTHR33494:SF1	PGSC:PGSC0003DMG400011210
RefSeq:XP_006343599.1	SEG:seg	UniParc:UPI000295E603	UniProt:M1ASB4	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400011210]

Coordinates

chr7:-:1318185..1326417

Molecular Weight (calculated)

58253.3 Da

IEP (calculated)

4.738

GRAVY (calculated)

-0.470

Length

533 amino acids

Sequence
(BLAST)

001: MVELMMSSGM ASFTVKFEVE DPLEDEHGPL TKRSKSSSAS SSFNQWDAGN DEFPVPPPEY NPLDEPSPLG LRLRKSPSLL DLITMRLSQN SGSSIAPENP
101: TSVSNTGTKG ASTSVATDKL KASNFSGSLL RIGSWEYASR YEGDLVAKCY FAKHKLVWEI LEGGLKSKIE IQWSDIMGLK ASCPEDGPGS LTLVLARQPL
201: FFKETNPQPR KHTLWQATSD FTGGQASLNR QHFLQCPLGV LNKHYEKLIQ CDVRLNSLSK QPELALESPY FDTKATLFEN LDELNDHGLD PVGSGKGSPL
301: SSIQDAASPA AAQSSSVSFE QPDLLGTAHE HLSRDTPSPS SVMDTHAVGD NANSIGYDSN RMQNLEQLKV PGLRPSMSMT DLVSHIEICI SQQINSGSLQ
401: SDEALECKGM LEDIAQMWLS DTQCTPASDE KSLMKKVNSL CCLLQDPIAS HEPHLNGENH LQKPVQSTDA CSSSACENDR NNEENAKDFV GGKLTPSIPR
501: IDSFGDLLLH LPRIASLPKF LFNIVEDDEN QSR

Best Arabidopsis Sequence Match ( AT2G24100.1 )
(BLAST)

001: MVEMMRSENH LRQASKHRNN NFPVKLEIIE DSLEEEHAPL NKRSKLWSNG TSVSKFSLLE EPSPLGLSLK KSPSFQELIE MKLSQSGDDS NSVKKESFGF
101: GGVGTVEKLK ASNFPATILR IGQWEYKSRY EGDLVAKCYF AKHKLVWEVL EQGLKSKIEI QWSDIMALKA NLPEDEPGTL TIVLARRPLF FRETNPQPRK
201: HTLWQATSDF TDGQASMNRQ HFLQCPPGIM NKHFEKLVQC DHRLFCLSRQ PEINLAAPFF DSRLSIFEDP SVSGSHNIAS PVGAQSSSEH VSLSHDALSP
301: SSVMDARAIE GVGGSIDSRN TNGWSQIKMP GLHQSISMND FLTFLSDQAC ENNQEFEEMK QLLLSDNTQT DPSDEKSVMS KVNSFCNLLQ SAANSQLNIE
401: TADTERVVGV DNNRHMPEGG KRVVDPASSS KPLQGMSRKD SFSDLLVHLP RITSLPKFLF NISEED

Arabidopsis Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:Q9ZUI1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.