Subcellular Localization
min:
: max
Winner_takes_all: vacuole, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G05770.1 | Thale cress | nucleus | 60.51 | 46.34 |
| CDY22822 | Canola | nucleus | 29.62 | 37.8 |
| Bra018890.1-P | Field mustard | nucleus | 29.62 | 37.8 |
| CDY25203 | Canola | cytosol | 28.34 | 36.93 |
| CDX74132 | Canola | cytosol | 34.39 | 26.93 |
| CDY05199 | Canola | nucleus | 33.12 | 25.94 |
| CDY14664 | Canola | cytosol | 32.8 | 25.37 |
| KRG90540 | Soybean | nucleus | 21.34 | 24.01 |
| KRH33824 | Soybean | nucleus | 21.34 | 23.59 |
| Bra001166.1-P | Field mustard | mitochondrion | 12.74 | 22.22 |
| KRH30889 | Soybean | cytosol | 16.24 | 20.73 |
| Bra001165.1-P | Field mustard | mitochondrion | 14.97 | 20.43 |
| CDY27740 | Canola | plastid | 32.48 | 20.0 |
| Bra039411.1-P | Field mustard | plastid | 32.48 | 19.96 |
| AT2G24100.1 | Thale cress | nucleus | 27.71 | 18.67 |
| GSMUA_Achr11P... | Banana | cytosol | 20.06 | 18.64 |
| Solyc01g100440.1.1 | Tomato | nucleus | 25.8 | 15.58 |
| AT4G30780.1 | Thale cress | nucleus | 28.03 | 14.94 |
| PGSC0003DMT400007166 | Potato | nucleus | 26.75 | 14.21 |
| VIT_14s0060g01240.t01 | Wine grape | cytosol | 25.16 | 12.68 |
Protein Annotations
| ArrayExpress:AT1G54300 | EnsemblPlants:AT1G54300.1 | EnsemblPlantsGene:AT1G54300 | EntrezGene:841871 | GO:GO:0008150 | PANTHER:PTHR33494 |
| PANTHER:PTHR33494:SF5 | ProteinID:AEE33077.1 | RefSeq:AT1G54300 | RefSeq:AT1G54300-TAIR-G | RefSeq:NP_175832.1 | SEG:seg |
| TAIR:AT1G54300 | TAIR:AT1G54300.1 | Unigene:At.49977 | UniParc:UPI000016313D | UniProt:F4HV99 | MapMan:35.2 |
Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05770.1); Has 107 Blast hits to 107 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 13 (sou /.../CBI BLink). [Source:TAIR;Acc:AT1G54300]
Coordinates
chr1:+:20270810..20272106
Molecular Weight (calculated)
36121.1 Da
IEP (calculated)
7.497
GRAVY (calculated)
-0.714
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFPISTIRI GGWVVVAKNP DDIVAKFYFA KKKLIWEFLF GEPETNTLRL KRKIEIQWND VSSFEESISS RDETGILKIE LKKRPTFFIE TNPQAGKHTQ
101: WKQLDHDFTG DHASNYRRHT LHFPPGVLQK NLEKLVTDSF WSKLYEVPFP VHESRYFDSG FENNSSRNSH SHTVGFNVNN GPQHHFSQGI GGVGVGEGNF
201: SMANGGWQRN SYSPVNSLNY NTANEFFGMQ ATPPSSQVVN EHYNTQNDFT GSQFGYHMNQ DEIQKILESQ AYAVPDTQTK LMSSAMNNVP KYPQAGSCLE
301: SMLFWYEHRR RFQQ
101: WKQLDHDFTG DHASNYRRHT LHFPPGVLQK NLEKLVTDSF WSKLYEVPFP VHESRYFDSG FENNSSRNSH SHTVGFNVNN GPQHHFSQGI GGVGVGEGNF
201: SMANGGWQRN SYSPVNSLNY NTANEFFGMQ ATPPSSQVVN EHYNTQNDFT GSQFGYHMNQ DEIQKILESQ AYAVPDTQTK LMSSAMNNVP KYPQAGSCLE
301: SMLFWYEHRR RFQQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.