Factsheet for Solyc06g074250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

nucleus 4
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g073150.2.1
Solyc07g005990.2.1
Solyc07g066570.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22360.1	Solyc07g066570.2.1	AT1G16500.1	21798944
AT5G22360.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT5G22360.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT5G22360.1	Solyc07g005990.2.1	AT2G24100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0080g00800.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	75.48	89.55
KRH25265	Soybean	plasma membrane	75.48	89.55
KRH30399	Soybean	endoplasmic reticulum	75.1	89.09
AT5G22360.1	Thale cress	plasma membrane	72.41	85.52
Zm00001d052756_P001	Maize	endoplasmic reticulum	63.22	85.49
Bra020187.1-P	Field mustard	endoplasmic reticulum	72.03	85.07
CDY09133	Canola	endoplasmic reticulum	72.03	85.07
PGSC0003DMT400015063	Potato	plastid	73.95	84.65
Bra006623.1-P	Field mustard	endoplasmic reticulum, plasma membrane	71.65	84.62
CDX70999	Canola	endoplasmic reticulum	71.65	84.62
CDX88799	Canola	plasma membrane	71.65	84.62
GSMUA_Achr11P...	Banana	endoplasmic reticulum	70.5	84.4
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	70.5	84.4
EES13179	Sorghum	endoplasmic reticulum, plasma membrane	69.73	81.98
TraesCS7A01G328000.1	Wheat	plasma membrane	69.35	81.53
TraesCS7B01G228700.1	Wheat	plasma membrane	69.35	81.53
TraesCS7D01G324800.1	Wheat	plasma membrane	69.35	81.53
HORVU7Hr1G078500.1	Barley	plasma membrane	68.97	81.08
Os10t0154000-01	Rice	plasma membrane	69.73	80.53
Solyc06g065950.2.1	Tomato	endoplasmic reticulum, nucleus	45.59	54.09
Solyc09g061620.2.1	Tomato	nucleus, plastid	32.95	39.09
Solyc09g091610.2.1	Tomato	plastid	32.95	38.91
Solyc12g098180.1.1	Tomato	cytosol, vacuole	32.57	38.46
Solyc06g083530.2.1	Tomato	plastid	31.03	36.82
Solyc02g069150.2.1	Tomato	nucleus	31.03	36.49
Solyc11g006780.1.1	Tomato	cytosol, mitochondrion, plasma membrane	31.42	34.17
Solyc01g066940.2.1	Tomato	cytosol	27.2	32.13
Solyc12g098170.1.1	Tomato	cytosol	6.9	5.9

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0006810	GO:GO:0006887	GO:GO:0006906	GO:GO:0006950	GO:GO:0008150
GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016192	GO:GO:0031201	InterPro:IPR001388	InterPro:IPR010908	UniProt:K4C9E3	InterPro:Longin-like_dom_sf
InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	PFscan:PS50859	PFscan:PS50892
PANTHER:PTHR21136	PANTHER:PTHR21136:SF165	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	EnsemblPlantsGene:Solyc06g074250.2
EnsemblPlants:Solyc06g074250.2.1	InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI00027663BF	:	:

Description

Vesicle-associated membrane protein 714 [Source:Projected from Arabidopsis thaliana (AT5G22360) UniProtKB/Swiss-Prot;Acc:Q9FMR5]

Coordinates

chr6:-:45900591..45904609

Molecular Weight (calculated)

29725.4 Da

IEP (calculated)

8.554

GRAVY (calculated)

0.052

Length

261 amino acids

Sequence
(BLAST)

001: MTGNADVRPI LCVLIKTSVD LLSSLQFEAP YFFDTYLCER EMAIVYAVVA RGTTVLAEFS AVTGNTGAVA RRILEKLPNE TESRLCFSQD RYIFHILRSN
101: GITFLCMANE TFGRRIPFSY LEDIQMRFMK NYGKVASYAP AYSMNDEFSR VLHQQMEFFS SNPSADTLNR VRGEVGEIRT IMVDNIEKIL ERGDRIELLV
201: DKTGTMQDNA FHFRKQSKRL RRALWMKNAK LLGLLTCLIV LFLYLIIAAC CGGITLPSCR S

Best Arabidopsis Sequence Match ( AT5G22360.1 )
(BLAST)

001: MAIVYAVVAR GTVVLAEFSA VTGNTGAVVR RILEKLSPEI SDERLCFSQD RYIFHILRSD GLTFLCMAND TFGRRVPFSY LEEIHMRFMK NYGKVAHNAP
101: AYAMNDEFSR VLHQQMEFFS SNPSVDTLNR VRGEVSEIRS VMVENIEKIM ERGDRIELLV DKTATMQDSS FHFRKQSKRL RRALWMKNAK LLVLLTCLIV
201: FLLYIIIASF CGGITLPSCR S

Arabidopsis Description

VAMP714Vesicle-associated membrane protein 714 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMR5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.