Factsheet for PGSC0003DMT400074186

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, golgi, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
golgi 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g006200.1.1	Tomato	golgi, mitochondrion, nucleus, plasma membrane	97.4	97.23
PGSC0003DMT400044798	Potato	golgi, mitochondrion	84.03	83.16
VIT_12s0057g01310.t01	Wine grape	mitochondrion	73.96	76.48
KRH16980	Soybean	mitochondrion	74.31	75.22
KRH72615	Soybean	mitochondrion	73.78	74.69
CDY27873	Canola	mitochondrion	67.01	72.83
Bra015145.1-P	Field mustard	mitochondrion	70.14	72.01
CDY00855	Canola	mitochondrion	69.62	70.97
AT2G04280.1	Thale cress	mitochondrion	69.62	70.6
AT4G12700.1	Thale cress	mitochondrion	68.4	70.23
GSMUA_AchrUn_...	Banana	golgi, mitochondrion, plasma membrane	60.42	65.17
GSMUA_AchrUn_...	Banana	plastid	60.42	59.18
Os10t0456400-01	Rice	golgi, mitochondrion	57.99	52.27
TraesCS1D01G141700.1	Wheat	mitochondrion	56.6	52.24
TraesCS1A01G142900.1	Wheat	unclear	56.6	52.24
EER94138	Sorghum	mitochondrion	57.64	52.12
Zm00001d032819_P001	Maize	plasma membrane	57.47	51.96
TraesCS1B01G158900.1	Wheat	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	56.77	51.9
PGSC0003DMT400082037	Potato	endoplasmic reticulum, plasma membrane	45.31	47.2
Os01t0805100-01	Rice	mitochondrion	26.39	44.71
PGSC0003DMT400003520	Potato	mitochondrion	12.33	43.29
TraesCS7B01G221300.2	Wheat	golgi	35.24	42.92
TraesCS7A01G320300.1	Wheat	golgi	35.07	42.71
TraesCS7D01G317200.1	Wheat	golgi	34.9	42.49
Zm00001d019764_P001	Maize	golgi, mitochondrion	33.16	41.89
HORVU7Hr1G076590.2	Barley	endoplasmic reticulum, golgi	34.72	40.4
OQU89047	Sorghum	endoplasmic reticulum, golgi, vacuole	32.47	39.12
PGSC0003DMT400021597	Potato	golgi	13.72	19.6
PGSC0003DMT400048710	Potato	extracellular	4.86	16.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400074186	EnsemblPlantsGene:PGSC0003DMG400028832	EntrezGene:102604420	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31469	PANTHER:PTHR31469:SF2	PGSC:PGSC0003DMG400028832	RefSeq:XP_006352008.1	RefSeq:XP_015166221.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002967E00	UniProt:M1CTB6	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028832]

Coordinates

chr12:-:6106050..6109531

Molecular Weight (calculated)

65527.7 Da

IEP (calculated)

5.639

GRAVY (calculated)

-0.532

Length

576 amino acids

Sequence
(BLAST)

001: MGRSPSLLSR NGSFRPENLG QNALAVIGNL CFTIFVVGVL IFTIMAATYE PEDPLFHPST KITNFLTSKS DATFKADDTV MKTGEDFIGA NQKAFSTFIN
101: LTDVDVSVSA TDSGTESDPD CHGKTDEPID CNDPDVFHLL MRVAIEKFKD IHFYRFGKSV RGSNDSSCHM AWRFRPKDGK TAAFYKDYRE FVVSRSDNCT
201: LSVVSIGEYH TGGNARKRKR KSKDRISGKS DEGFEKVAKT GGQNVALPEV GEAVNDSLPV VESESSFKRG KYLVYHGGGD RCKSMNHYLW SFMCALGEAQ
301: YLNRTLIMDL SICLSKIYTS SGVDEEGKDF RFYFDFEHLK DSASVLDQEQ FWADWEKWHQ KDGLSLHLVE DFRVNPMKLS GLKDTLIVRK FGNVEPDNYW
401: YRVCEGETES VVQRPWHLVW KSRRLMDIVS AIASRLNWDY DSVHVVRGEK ARNREMWPHL AEDTSPDALL SSLQDKIDDG RNLYIATNEQ ETSFFNPLKD
501: KYSTHFLSDY RDLWDEGSEW YLDTAKLHNG SPVEFDGYMR VSVDTEVFLR GKKQIETFND LTKDCKDGIN TCTSSS

Best Arabidopsis Sequence Match ( AT4G12700.1 )
(BLAST)

001: MSGRSAFSRT GGFRPENLGQ NAVSLIGSIG FSVLVIGVVV FTIIAATYEP EDPLFHPSDK ITTFLTSNSN ATLKSDDSIV KTGEDFMAAN QTAFGGFINI
101: ADVETSENDS DGNQLDCDTN IPIDCKDPEV FHLMMKATME KFKDSHFYKF GKPVIVEGSS SSCDMAWRYR PKDGKAAAFY KDYRRFVIEK SGNCSVSVMG
201: IGEYHSGVNA RKRKRPGFRN SSGGKVDDFA LPVVGEAVND SLPVVESENV FKEGHYLVYS GGGDRCKSMN HFLWSFLCAL GEAQYLNRTL VMDLTLCLSS
301: VYTLSGQNEE GKDFRFYFDF EHLKEAASML DQVQFWADWG KWYKKNGLKL HLVEDFRVTP MKLVDVKDTL IMRKFGTVEP DNYWYRVCEG ETESVVQRPW
401: NLLWKSKRLM EIVSAIASRL NWDYDAIHIE RGDKARNKEV WPNLEKDTSP SSILSTLQDK IEQGRNLYIA TNEPELSFFN PLKDKYKPHF LDEFKDLWDE
501: SSEWYSETTK LNGGNPVEFD GYMRASVDTE VFLRGKKQIE TFNDLTNDCR DGIGTCNVAA S

Arabidopsis Description

At4g12700 [Source:UniProtKB/TrEMBL;Acc:Q9SU16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.