Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015145.1-P | Field mustard | mitochondrion | 86.8 | 87.88 |
| CDY00855 | Canola | mitochondrion | 87.32 | 87.79 |
| CDY27873 | Canola | mitochondrion | 81.51 | 87.36 |
| AT4G12700.1 | Thale cress | mitochondrion | 81.34 | 82.35 |
| VIT_12s0057g01310.t01 | Wine grape | mitochondrion | 72.89 | 74.33 |
| KRH16980 | Soybean | mitochondrion | 74.12 | 73.99 |
| KRH72615 | Soybean | mitochondrion | 73.42 | 73.29 |
| PGSC0003DMT400074186 | Potato | cytosol, golgi, mitochondrion, plasma membrane | 70.6 | 69.62 |
| Solyc12g006200.1.1 | Tomato | golgi, mitochondrion, nucleus, plasma membrane | 70.6 | 69.5 |
| Solyc07g045210.1.1 | Tomato | golgi, mitochondrion | 70.6 | 68.9 |
| PGSC0003DMT400044798 | Potato | golgi, mitochondrion | 70.42 | 68.73 |
| GSMUA_AchrUn_... | Banana | golgi, mitochondrion, plasma membrane | 59.15 | 62.92 |
| GSMUA_AchrUn_... | Banana | plastid | 59.68 | 57.65 |
| TraesCS1D01G141700.1 | Wheat | mitochondrion | 57.92 | 52.72 |
| TraesCS1A01G142900.1 | Wheat | unclear | 57.57 | 52.4 |
| TraesCS1B01G158900.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 58.1 | 52.38 |
| Zm00001d032819_P001 | Maize | plasma membrane | 57.75 | 51.49 |
| Os10t0456400-01 | Rice | golgi, mitochondrion | 57.75 | 51.33 |
| EER94138 | Sorghum | mitochondrion | 57.39 | 51.18 |
| AT4G08810.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 45.07 | 46.38 |
| Os01t0805100-01 | Rice | mitochondrion | 25.35 | 42.35 |
| Zm00001d019764_P001 | Maize | golgi, mitochondrion | 33.98 | 42.32 |
| TraesCS7B01G221300.2 | Wheat | golgi | 34.86 | 41.86 |
| TraesCS7A01G320300.1 | Wheat | golgi | 34.68 | 41.65 |
| TraesCS7D01G317200.1 | Wheat | golgi | 34.51 | 41.44 |
| OQU89047 | Sorghum | endoplasmic reticulum, golgi, vacuole | 33.45 | 39.75 |
| HORVU7Hr1G076590.2 | Barley | endoplasmic reticulum, golgi | 34.33 | 39.39 |
| AT3G56750.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 13.2 | 18.61 |
| AT2G41150.2 | Thale cress | endoplasmic reticulum, golgi | 12.68 | 17.82 |
Protein Annotations
| MapMan:35.2 | EntrezGene:814966 | ProteinID:AAD27910.1 | ProteinID:AEC05818.1 | ArrayExpress:AT2G04280 | EnsemblPlantsGene:AT2G04280 |
| RefSeq:AT2G04280 | TAIR:AT2G04280 | RefSeq:AT2G04280-TAIR-G | EnsemblPlants:AT2G04280.1 | TAIR:AT2G04280.1 | EMBL:AY056207 |
| Unigene:At.41329 | EMBL:BT015416 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 | GO:GO:0005802 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016757 | EMBL:KY906057 | RefSeq:NP_565310.1 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR31469 | PANTHER:PTHR31469:SF2 | UniProt:Q9SI07 | TMHMM:TMhelix | UniParc:UPI000009E31A |
| SEG:seg | : | : | : | : | : |
Description
At2g04280 [Source:UniProtKB/TrEMBL;Acc:Q9SI07]
Coordinates
chr2:-:1480068..1482089
Molecular Weight (calculated)
64563.1 Da
IEP (calculated)
5.724
GRAVY (calculated)
-0.457
Length
568 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGRSAIRGG GFRAENLGQN ALTLIGNIGF SLFVFGVLIF TIIAATYEPE DPLFHPSDKI TTFLTSTSNA TLRSDDSVVK TGEDFMLANQ TAFAEFININ
101: DVEASTNETT TEEEGNKLEC DVNTPIDCKD QQVFHLMMRA TIDKFKDIHF YKFGKPVTGE EGVNSCDMAW RYRPRDGKSA AFYKDYRRFV VAKSENCSVS
201: VVGIGEYHSG LNARKRKKNQ KAGFEKTGGK KDDFSLPVVG ELVNDSLPMV ESDSVFKTGK YLVYVGGGDR CKSMNHFLWS FLCALGEAQY LNRTLVMDLT
301: LCLSSIYTSS GQNEEGKDFR FYFDFEHLKE AASVLDEAQF WAQWGKLRKK RRNRLNLHLV EDFRVTPMKL AAVKDTLIMR KFGSVEPDNY WYRVCEGDAE
401: SVVKRPWHLL WKSRRLMEIV SAIASRLNWD YDAVHIERGE KARNKEVWPN LEADTSPSAL LSTLQDKVEE GRHLYIATNE GELSFFNPLK DKYATHFLYD
501: YKDLWDESSE WYSETTKLNG GNPVEFDGYM RASVDTEVFL RGKKQIETFN DLTNDCKDGV GTCNAATS
101: DVEASTNETT TEEEGNKLEC DVNTPIDCKD QQVFHLMMRA TIDKFKDIHF YKFGKPVTGE EGVNSCDMAW RYRPRDGKSA AFYKDYRRFV VAKSENCSVS
201: VVGIGEYHSG LNARKRKKNQ KAGFEKTGGK KDDFSLPVVG ELVNDSLPMV ESDSVFKTGK YLVYVGGGDR CKSMNHFLWS FLCALGEAQY LNRTLVMDLT
301: LCLSSIYTSS GQNEEGKDFR FYFDFEHLKE AASVLDEAQF WAQWGKLRKK RRNRLNLHLV EDFRVTPMKL AAVKDTLIMR KFGSVEPDNY WYRVCEGDAE
401: SVVKRPWHLL WKSRRLMEIV SAIASRLNWD YDAVHIERGE KARNKEVWPN LEADTSPSAL LSTLQDKVEE GRHLYIATNE GELSFFNPLK DKYATHFLYD
501: YKDLWDESSE WYSETTKLNG GNPVEFDGYM RASVDTEVFL RGKKQIETFN DLTNDCKDGV GTCNAATS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.