Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 4
- golgi 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G04280.1 | Thale cress | mitochondrion | 82.35 | 81.34 |
| KRH16980 | Soybean | mitochondrion | 74.69 | 73.64 |
| VIT_12s0057g01310.t01 | Wine grape | mitochondrion | 72.73 | 73.25 |
| KRH72615 | Soybean | mitochondrion | 73.97 | 72.94 |
| Solyc12g006200.1.1 | Tomato | golgi, mitochondrion, nucleus, plasma membrane | 70.41 | 68.46 |
| PGSC0003DMT400074186 | Potato | cytosol, golgi, mitochondrion, plasma membrane | 70.23 | 68.4 |
| PGSC0003DMT400044798 | Potato | golgi, mitochondrion | 70.77 | 68.21 |
| Solyc07g045210.1.1 | Tomato | golgi, mitochondrion | 70.59 | 68.04 |
| GSMUA_AchrUn_... | Banana | golgi, mitochondrion, plasma membrane | 59.0 | 61.98 |
| GSMUA_AchrUn_... | Banana | plastid | 59.89 | 57.14 |
| TraesCS1D01G141700.1 | Wheat | mitochondrion | 56.68 | 50.96 |
| TraesCS1A01G142900.1 | Wheat | unclear | 56.51 | 50.8 |
| TraesCS1B01G158900.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 56.86 | 50.63 |
| Os10t0456400-01 | Rice | golgi, mitochondrion | 57.04 | 50.08 |
| Zm00001d032819_P001 | Maize | plasma membrane | 56.68 | 49.92 |
| EER94138 | Sorghum | mitochondrion | 56.68 | 49.92 |
| AT4G08810.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 45.1 | 45.83 |
| Os01t0805100-01 | Rice | mitochondrion | 26.2 | 43.24 |
| Zm00001d019764_P001 | Maize | golgi, mitochondrion | 35.12 | 43.2 |
| TraesCS7B01G221300.2 | Wheat | golgi | 35.12 | 41.65 |
| TraesCS7A01G320300.1 | Wheat | golgi | 34.94 | 41.44 |
| TraesCS7D01G317200.1 | Wheat | golgi | 34.76 | 41.23 |
| OQU89047 | Sorghum | endoplasmic reticulum, golgi, vacuole | 33.87 | 39.75 |
| HORVU7Hr1G076590.2 | Barley | endoplasmic reticulum, golgi | 34.58 | 39.19 |
| AT3G56750.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 14.26 | 19.85 |
| AT2G41150.2 | Thale cress | endoplasmic reticulum, golgi | 13.37 | 18.56 |
Protein Annotations
| MapMan:35.2 | EntrezGene:826882 | ProteinID:AEE83165.1 | EMBL:AK227814 | ArrayExpress:AT4G12700 | EnsemblPlantsGene:AT4G12700 |
| RefSeq:AT4G12700 | TAIR:AT4G12700 | RefSeq:AT4G12700-TAIR-G | EnsemblPlants:AT4G12700.1 | TAIR:AT4G12700.1 | EMBL:BT010366 |
| ProteinID:CAB40987.1 | ProteinID:CAB78312.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016757 | EMBL:KY906076 | RefSeq:NP_193006.1 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31469 | PANTHER:PTHR31469:SF2 | UniProt:Q9SU16 | TMHMM:TMhelix |
| UniParc:UPI00000AA17F | : | : | : | : | : |
Description
At4g12700 [Source:UniProtKB/TrEMBL;Acc:Q9SU16]
Coordinates
chr4:-:7482361..7484566
Molecular Weight (calculated)
63489.7 Da
IEP (calculated)
5.082
GRAVY (calculated)
-0.434
Length
561 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGRSAFSRT GGFRPENLGQ NAVSLIGSIG FSVLVIGVVV FTIIAATYEP EDPLFHPSDK ITTFLTSNSN ATLKSDDSIV KTGEDFMAAN QTAFGGFINI
101: ADVETSENDS DGNQLDCDTN IPIDCKDPEV FHLMMKATME KFKDSHFYKF GKPVIVEGSS SSCDMAWRYR PKDGKAAAFY KDYRRFVIEK SGNCSVSVMG
201: IGEYHSGVNA RKRKRPGFRN SSGGKVDDFA LPVVGEAVND SLPVVESENV FKEGHYLVYS GGGDRCKSMN HFLWSFLCAL GEAQYLNRTL VMDLTLCLSS
301: VYTLSGQNEE GKDFRFYFDF EHLKEAASML DQVQFWADWG KWYKKNGLKL HLVEDFRVTP MKLVDVKDTL IMRKFGTVEP DNYWYRVCEG ETESVVQRPW
401: NLLWKSKRLM EIVSAIASRL NWDYDAIHIE RGDKARNKEV WPNLEKDTSP SSILSTLQDK IEQGRNLYIA TNEPELSFFN PLKDKYKPHF LDEFKDLWDE
501: SSEWYSETTK LNGGNPVEFD GYMRASVDTE VFLRGKKQIE TFNDLTNDCR DGIGTCNVAA S
101: ADVETSENDS DGNQLDCDTN IPIDCKDPEV FHLMMKATME KFKDSHFYKF GKPVIVEGSS SSCDMAWRYR PKDGKAAAFY KDYRRFVIEK SGNCSVSVMG
201: IGEYHSGVNA RKRKRPGFRN SSGGKVDDFA LPVVGEAVND SLPVVESENV FKEGHYLVYS GGGDRCKSMN HFLWSFLCAL GEAQYLNRTL VMDLTLCLSS
301: VYTLSGQNEE GKDFRFYFDF EHLKEAASML DQVQFWADWG KWYKKNGLKL HLVEDFRVTP MKLVDVKDTL IMRKFGTVEP DNYWYRVCEG ETESVVQRPW
401: NLLWKSKRLM EIVSAIASRL NWDYDAIHIE RGDKARNKEV WPNLEKDTSP SSILSTLQDK IEQGRNLYIA TNEPELSFFN PLKDKYKPHF LDEFKDLWDE
501: SSEWYSETTK LNGGNPVEFD GYMRASVDTE VFLRGKKQIE TFNDLTNDCR DGIGTCNVAA S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.