Factsheet for VIT_12s0057g01310.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
golgi 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16980	Soybean	mitochondrion	80.79	79.09
KRH72615	Soybean	mitochondrion	80.07	78.38
CDY27873	Canola	mitochondrion	71.27	74.91
Solyc07g045210.1.1	Tomato	golgi, mitochondrion	77.74	74.4
Solyc12g006200.1.1	Tomato	golgi, mitochondrion, nucleus, plasma membrane	76.84	74.18
PGSC0003DMT400044798	Potato	golgi, mitochondrion	77.38	74.06
PGSC0003DMT400074186	Potato	cytosol, golgi, mitochondrion, plasma membrane	76.48	73.96
Bra015145.1-P	Field mustard	mitochondrion	74.33	73.8
CDY00855	Canola	mitochondrion	74.33	73.27
AT2G04280.1	Thale cress	mitochondrion	74.33	72.89
AT4G12700.1	Thale cress	mitochondrion	73.25	72.73
GSMUA_AchrUn_...	Banana	golgi, mitochondrion, plasma membrane	64.27	67.04
GSMUA_AchrUn_...	Banana	plastid	65.35	61.9
EER94138	Sorghum	mitochondrion	60.86	53.22
TraesCS1D01G141700.1	Wheat	mitochondrion	59.43	53.04
TraesCS1A01G142900.1	Wheat	unclear	59.43	53.04
Zm00001d032819_P001	Maize	plasma membrane	60.5	52.9
TraesCS1B01G158900.1	Wheat	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	59.6	52.7
Os10t0456400-01	Rice	golgi, mitochondrion	60.14	52.43
VIT_06s0004g00600.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	49.55	49.46
Os01t0805100-01	Rice	mitochondrion	26.93	44.12
Zm00001d019764_P001	Maize	golgi, mitochondrion	34.83	42.54
TraesCS7A01G320300.1	Wheat	golgi	35.19	41.44
TraesCS7B01G221300.2	Wheat	golgi	35.19	41.44
TraesCS7D01G317200.1	Wheat	golgi	35.01	41.23
HORVU7Hr1G076590.2	Barley	endoplasmic reticulum, golgi	35.19	39.6
OQU89047	Sorghum	endoplasmic reticulum, golgi, vacuole	33.93	39.54
VIT_08s0040g01260.t01	Wine grape	golgi	13.82	19.35

Protein Annotations

ArrayExpress:VIT_12s0057g01310	EMBL:FN595759	EnsemblPlants:VIT_12s0057g01310.t01	EnsemblPlantsGene:VIT_12s0057g01310	EntrezGene:100266500	EntrezGene:LOC100266500
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR31469	PANTHER:PTHR31469:SF2	ProteinID:CCB51754
ProteinID:CCB51754.1	RefSeq:XP_002264832	RefSeq:XP_002264832.1	TMHMM:TMhelix	unigene:Vvi.5933	UniParc:UPI00019846A8
UniProt:F6HHQ8	wikigene:100266500	wikigene:LOC100266500	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr12:+:10052259..10054271

Molecular Weight (calculated)

63570.9 Da

IEP (calculated)

5.143

GRAVY (calculated)

-0.466

Length

557 amino acids

Sequence
(BLAST)

001: MLGRSALSRT GSFRPENLGQ NAMVMIGNLC FTLFVIGVLI FTIIAATYEP EDPLFHPSTK ITTFLTSTSN ATFKSDNSVV KTGEDFMRPN ETAIAAFINI
101: TDVQNPTPDS TECEGGVDQP IDCSDPDVFH LMMRAAIEVF RDIHFYRFGK PVRGSNESTC DMAWRFRPKE GKTASFYKDY RRFVISKSEN CTLSVLGIGD
201: YHTGVNARKK KRNQKPGFQK QEPAATLPVV GEVVNDSLPV VESEGSFSQG KYLVYIGGGD RCKSMNHYLW SFLCALGEAQ YLNRTLIMDL SLCLSSIYTK
301: SNRDEEGKDF RLYFDFEHLK ESASVLDQAQ FWSDWNKWQK KDGLNLHLVE DFRITPMKLA EVKDALIMRK FGSVEPDNYW YRVCEGETES VVQRPWHLIW
401: KSKRLMDIVS GIASRLNWDF DSVHVVRGEK ARNRDLWPNL DTDTSPDALL SSLQEKIEDG RNLYIATNEP DTSFFDPLKD KYSTHFLDDY KDLWDEKSDW
501: YTETTKLNNE APVQFDGYMR ISVDTEVFLR GKKQIETFND LTSDCKDGIN TCSTAAS

Best Arabidopsis Sequence Match ( AT2G04280.1 )
(BLAST)

001: MFGRSAIRGG GFRAENLGQN ALTLIGNIGF SLFVFGVLIF TIIAATYEPE DPLFHPSDKI TTFLTSTSNA TLRSDDSVVK TGEDFMLANQ TAFAEFININ
101: DVEASTNETT TEEEGNKLEC DVNTPIDCKD QQVFHLMMRA TIDKFKDIHF YKFGKPVTGE EGVNSCDMAW RYRPRDGKSA AFYKDYRRFV VAKSENCSVS
201: VVGIGEYHSG LNARKRKKNQ KAGFEKTGGK KDDFSLPVVG ELVNDSLPMV ESDSVFKTGK YLVYVGGGDR CKSMNHFLWS FLCALGEAQY LNRTLVMDLT
301: LCLSSIYTSS GQNEEGKDFR FYFDFEHLKE AASVLDEAQF WAQWGKLRKK RRNRLNLHLV EDFRVTPMKL AAVKDTLIMR KFGSVEPDNY WYRVCEGDAE
401: SVVKRPWHLL WKSRRLMEIV SAIASRLNWD YDAVHIERGE KARNKEVWPN LEADTSPSAL LSTLQDKVEE GRHLYIATNE GELSFFNPLK DKYATHFLYD
501: YKDLWDESSE WYSETTKLNG GNPVEFDGYM RASVDTEVFL RGKKQIETFN DLTNDCKDGV GTCNAATS

Arabidopsis Description

At2g04280 [Source:UniProtKB/TrEMBL;Acc:Q9SI07]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.