Factsheet for VIT_06s0004g00600.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
plastid 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G08810.1	Thale cress	endoplasmic reticulum, golgi, plastid	72.58	73.37
CDX90695	Canola	endoplasmic reticulum, golgi, plastid	70.79	71.69
Bra000656.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	71.33	71.58
PGSC0003DMT400082037	Potato	endoplasmic reticulum, plasma membrane	70.43	71.07
CDY05025	Canola	endoplasmic reticulum, golgi, plastid	70.79	70.92
KRH58921	Soybean	endoplasmic reticulum	72.58	70.68
KRH42826	Soybean	nucleus	71.86	69.74
HORVU2Hr1G028070.1	Barley	endoplasmic reticulum, plastid	45.34	65.37
GSMUA_Achr4P00760_001	Banana	golgi, plasma membrane	64.87	64.3
GSMUA_Achr6P01490_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	64.52	61.54
Solyc01g005690.2.1	Tomato	plastid	45.7	57.56
Zm00001d022247_P001	Maize	plasma membrane	59.86	57.49
EER99762	Sorghum	cytosol, endoplasmic reticulum, nucleus, plastid	59.68	56.92
TraesCS2B01G179800.1	Wheat	endoplasmic reticulum, plastid	59.32	56.39
Os07t0633600-01	Rice	golgi	58.96	56.24
TraesCS2A01G154600.1	Wheat	unclear	58.06	55.67
VIT_12s0057g01310.t01	Wine grape	mitochondrion	49.46	49.55
VIT_08s0040g01260.t01	Wine grape	golgi	13.26	18.59

Protein Annotations

EntrezGene:100253639	wikigene:100253639	MapMan:35.2	EMBL:AM440566	ProteinID:CAN65049	ProteinID:CAN65049.1
ProteinID:CCB43803	ProteinID:CCB43803.1	UniProt:F6GUK8	EMBL:FN594951	InterPro:GDP-Fuc_O-FucTrfase	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005975	GO:GO:0006004	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	GO:GO:0042175	EntrezGene:LOC100253639
wikigene:LOC100253639	PFAM:PF10250	PANTHER:PTHR31469	PANTHER:PTHR31469:SF2	TMHMM:TMhelix	UniParc:UPI00015C7DFA
ArrayExpress:VIT_06s0004g00600	EnsemblPlantsGene:VIT_06s0004g00600	EnsemblPlants:VIT_06s0004g00600.t01	unigene:Vvi.13694	RefSeq:XP_002285710	RefSeq:XP_002285710.1
RefSeq:XP_003632119	RefSeq:XP_003632119.1	RefSeq:XP_010651377.1	:	:	:

Description

No Description!

Coordinates

chr6:-:765694..767656

Molecular Weight (calculated)

64877.0 Da

IEP (calculated)

8.305

GRAVY (calculated)

-0.536

Length

558 amino acids

Sequence
(BLAST)

001: MKEDSNLTEP IGQNLIKVIS NVCFSVFVFA VLIFTVIAIT YQPPDPWLES SPALTKLFTQ FHNATFQNDN SVLKTGEDLP DFGVAETPAV APAVMPITEA
101: VIEEKEERVT NMSLKSDCDL TGPVNCSDPR VLIAIERFNL RFFKAIVFLE YQTPVSGSAP NECDVSWRFR NKKEKSWRKY RDFRRFRIGV GENCTYRVTG
201: ANGWHSGVNA RRQRSRVNAT RSGGGIGRIA PPVRDEEIND TIPVLGSEMT FRKGKYLYYS RGGDYCKGMN HFLWSFLCGL GEAQYLNRTF VMDLSICLAA
301: TYNPSNKDEE GKDFRYYFDF EHLKEVASIV EEGEFLRDWK KWDHSRKRKV PVRKVATYKV TPMQLSKDRS TIIYRQFDAP EPENYWYRVC EGQAAKYIQR
401: PWHALWKSKR LMNIVTEISG RMDWDFDAVH VVRGEKAQNK ELWPHLDSDT SPDALLAKLK EMVHPWRNLY IATNEPFYNY FDKLRSQYKV HLLDDYKELW
501: GNTSDWYNET RLLNRGRPVE FDGYMKVAVD TEVLYRAKTR VETFYNLTKD CKDGINTC

Best Arabidopsis Sequence Match ( AT4G08810.1 )
(BLAST)

001: MKESDLTTEP IAQNLIKLIS NVCFSVFVFT VLIFTVIAVT YQPPDPWLES APALTKLLTE TENATFKIDG SILKTGEDLA SSPSSSPPSN STEQVTEATI
101: EKSEAKIGNM TVKNSIDCDE DLKIVNCSDP RVLVAVERFN LKVFKSIVFL EYETPVNGSK LDECDVSWRF RNKKEKSWRR YRDFRRFRFG FGENCTYKVF
201: HTSGWHSGVN ARRPRISRPS SSRGARGGDS EINDTIPTLG SQTSFRRGKY LYYSRGGDYC KGMNQYMWSF LCGLGEAMYL NRTFVMDLSL CLSSSYSSKG
301: KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW
401: KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DADTWPDAIL TKLKGLVQVW RNLYVATNEP FYNYFDKLRS QYKVHLLDDY SYLWGNKSEW
501: YNETSLLNNG KPVEFDGYMR VAVDTEVFYR GKTRVETFYN LTTDCKDGIN TC

Arabidopsis Description

SUB1SUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWI5]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.