CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plastid

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plastid
Any Predictor:	endoplasmic reticulum, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000656.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	97.49	97.66
CDX90695	Canola	endoplasmic reticulum, golgi, plastid	96.59	97.64
AT4G08810.1	Thale cress	endoplasmic reticulum, golgi, plastid	88.69	89.49
VIT_06s0004g00600.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	70.92	70.79
PGSC0003DMT400082037	Potato	endoplasmic reticulum, plasma membrane	69.84	70.34
KRH42826	Soybean	nucleus	70.02	67.83
KRH58921	Soybean	endoplasmic reticulum	69.48	67.54
HORVU2Hr1G028070.1	Barley	endoplasmic reticulum, plastid	44.7	64.34
GSMUA_Achr4P00760_001	Banana	golgi, plasma membrane	61.04	60.39
Solyc01g005690.2.1	Tomato	plastid	47.22	59.37
GSMUA_Achr6P01490_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	61.76	58.8
Os07t0633600-01	Rice	golgi	58.35	55.56
Zm00001d022247_P001	Maize	plasma membrane	57.81	55.42
TraesCS2B01G179800.1	Wheat	endoplasmic reticulum, plastid	58.35	55.37
TraesCS2A01G154600.1	Wheat	unclear	57.81	55.33
EER99762	Sorghum	cytosol, endoplasmic reticulum, nucleus, plastid	57.99	55.21
CDY27873	Canola	mitochondrion	44.52	46.79
CDY00855	Canola	mitochondrion	45.24	44.6
CDY23872	Canola	endoplasmic reticulum, golgi, mitochondrion	14.9	20.8
CDX79955	Canola	endoplasmic reticulum, golgi, mitochondrion	14.54	20.25
CDY27198	Canola	endoplasmic reticulum, golgi, mitochondrion	14.0	19.21
CDY51258	Canola	endoplasmic reticulum, golgi, mitochondrion	13.82	19.11
CDY65073	Canola	endoplasmic reticulum, golgi	13.82	19.11
CDX67655	Canola	endoplasmic reticulum, golgi, mitochondrion	13.82	19.11

Protein Annotations

EnsemblPlants:CDY05025	EnsemblPlantsGene:GSBRNA2T00119770001	GO:A0A078ESZ0	InterPro:GDP-Fuc_O-FucTrfase	KEGG:00052+2.4.1.22	KEGG:00514+2.4.1.221
PANTHER:PTHR31469	PANTHER:PTHR31469:SF2	PFAM:PF10250	ProteinID:CDY05025	ProteinID:CDY05025.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EF4BA6	UniPathway:UPA00378	MapMan:35.2	:	:

Description

BnaC03g28230D

Coordinates

chrLK031959:-:98971..100971

Molecular Weight (calculated)

64283.0 Da

IEP (calculated)

8.025

GRAVY (calculated)

-0.550

Length

557 amino acids

Sequence
(BLAST)

001: MKESDLTTEP IAQNLIKLIS NVCFSVFVFT VLIFTVIAVT YQPPDPWLES APALTKLLTA NENATFKIDS SMLNTGEDIA SSPISPPANS TGPVTEATIE
101: LSEEKIGNMT VNSSSVDCDD LKVVNCSDPR VLVAVQRFNL RVFKSIVFLE YETPVNGSKP DECDVSWRFR NKKEKSWRRY RDFRSFKFAF GENCTYEVFH
201: TSGWHSGVNA RRFRIKPRGG GGGGPKAPRG AGRDPEINDT IPTLGSQTNF RRGKYLYYSR GGDYCKGMNQ YMWSFLCGLG EAMYLNRTFV MDLSLCLSSS
301: YSSKGVDEEG KDFRYYFDFE HLKESASIVE EGEFVRDWKK WNRSHKRKVA VRKVKTHKVS PLQLSKDKST IIWRQFDAPE PENYWYRVCE GEASKYVERP
401: WQTLWKSKRL MNIVSEISGK MDWDFDAVHV VRGEKAMDKK LWPHLDEDTW PDAILNKLRG LVQPWRNLYV ATNEPFYNYF DKLRSQYKVH LLDDYSYLWG
501: NNSEWYNETS LLNNGKPVEF DGYMRVAVDT EVFIRGKTRV ETFNNLTMDC KDGINTC

Best Arabidopsis Sequence Match ( AT4G08810.1 )
(BLAST)

001: MKESDLTTEP IAQNLIKLIS NVCFSVFVFT VLIFTVIAVT YQPPDPWLES APALTKLLTE TENATFKIDG SILKTGEDLA SSPSSSPPSN STEQVTEATI
101: EKSEAKIGNM TVKNSIDCDE DLKIVNCSDP RVLVAVERFN LKVFKSIVFL EYETPVNGSK LDECDVSWRF RNKKEKSWRR YRDFRRFRFG FGENCTYKVF
201: HTSGWHSGVN ARRPRISRPS SSRGARGGDS EINDTIPTLG SQTSFRRGKY LYYSRGGDYC KGMNQYMWSF LCGLGEAMYL NRTFVMDLSL CLSSSYSSKG
301: KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW
401: KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DADTWPDAIL TKLKGLVQVW RNLYVATNEP FYNYFDKLRS QYKVHLLDDY SYLWGNKSEW
501: YNETSLLNNG KPVEFDGYMR VAVDTEVFYR GKTRVETFYN LTTDCKDGIN TC

Arabidopsis Description

SUB1SUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWI5]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.