CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi

Predictor Summary:

plastid 2
mitochondrion 3
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79955	Canola	endoplasmic reticulum, golgi, mitochondrion	94.99	94.75
AT2G41150.2	Thale cress	endoplasmic reticulum, golgi	78.7	77.72
CDY65073	Canola	endoplasmic reticulum, golgi	76.69	75.93
CDY27198	Canola	endoplasmic reticulum, golgi, mitochondrion	76.94	75.62
CDX67655	Canola	endoplasmic reticulum, golgi, mitochondrion	74.44	73.7
CDY51258	Canola	endoplasmic reticulum, golgi, mitochondrion	73.68	72.95
Zm00001d010457_P001	Maize	cytosol	22.31	70.08
GSMUA_Achr5P27540_001	Banana	cytosol	47.62	65.52
KRH36835	Soybean	endoplasmic reticulum	62.91	65.19
KRH71696	Soybean	golgi	63.16	64.62
TraesCS2A01G146500.1	Wheat	endoplasmic reticulum	47.87	63.46
VIT_08s0040g01260.t01	Wine grape	golgi	61.4	61.56
Solyc10g078400.1.1	Tomato	golgi	59.9	59.75
PGSC0003DMT400021597	Potato	golgi	59.9	59.31
EER94809	Sorghum	mitochondrion	58.15	59.18
Os03t0366700-01	Rice	plastid	58.15	58.73
TraesCS2D01G151100.1	Wheat	mitochondrion	56.64	57.65
TraesCS2B01G171800.1	Wheat	mitochondrion	56.39	57.4
EER97624	Sorghum	mitochondrion	56.89	57.04
HORVU2Hr1G026040.3	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	56.89	56.47
Zm00001d006931_P002	Maize	plasma membrane	55.89	56.03
Zm00001d029266_P002	Maize	mitochondrion	57.39	48.41
Zm00001d004819_P001	Maize	mitochondrion	30.33	42.46
Zm00001d022294_P002	Maize	plastid	17.04	40.48
GSMUA_Achr3P09270_001	Banana	plasma membrane	58.9	35.77
Zm00001d016377_P001	Maize	nucleus	12.53	34.72
CDX90695	Canola	endoplasmic reticulum, golgi, plastid	20.8	15.06
CDY05025	Canola	endoplasmic reticulum, golgi, plastid	20.8	14.9
CDY27873	Canola	mitochondrion	19.3	14.53
CDY00855	Canola	mitochondrion	19.8	13.98

Protein Annotations

KEGG:00052+2.4.1.22	KEGG:00514+2.4.1.221	MapMan:35.2	UniProt:A0A078GFG2	EnsemblPlants:CDY23872	ProteinID:CDY23872
ProteinID:CDY23872.1	InterPro:GDP-Fuc_O-FucTrfase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006004
GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0016757	EnsemblPlantsGene:GSBRNA2T00024305001	PFAM:PF10250
PANTHER:PTHR31469	PANTHER:PTHR31469:SF8	TMHMM:TMhelix	UniPathway:UPA00378	UniParc:UPI0004EE60AB	SEG:seg

Description

BnaC04g01650DBnaC04g01650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFG2]

Coordinates

chrLK032150:-:367270..369282

Molecular Weight (calculated)

45510.6 Da

IEP (calculated)

9.252

GRAVY (calculated)

-0.421

Length

399 amino acids

Sequence
(BLAST)

001: MATMSKTHRS KTTHGSKRLV LLSLLAAAAL LLLLFSSSFS TGGSGLVDYF SRSSRTKRQH TLSDKYLYWG DRVDCPGKNC ESCAGLGHQE SSLRCALEEA
101: MFLNRTFVMP SRMCINPIHN KKGVLNGSDN ESWEVSFCAM ESLYDVDLIS EKIPVILDDS ETWHIVLSTG MKLKERGIAH VSGASRREVN DSSHYANLLL
201: INRTASPLAW FVECKDRIDR SNVMLPYSFL PSMAAPRLRN AAEKIKAQLG DYDAIHVRRG DKLKTRKDRF NVGKTQFPHL DRDTRPEFIM SRIQKQIPPG
301: RTLYIGSNER TPGFFSPLSA RYKVVYSSNF SEILDPVIEN NYQLFMVERL VMMGAKTFFK TFREFETDLT LTDDPKKNKN WEIPVYTMDQ DKEELKTTH

Best Arabidopsis Sequence Match ( AT4G12700.1 )
(BLAST)

001: MSGRSAFSRT GGFRPENLGQ NAVSLIGSIG FSVLVIGVVV FTIIAATYEP EDPLFHPSDK ITTFLTSNSN ATLKSDDSIV KTGEDFMAAN QTAFGGFINI
101: ADVETSENDS DGNQLDCDTN IPIDCKDPEV FHLMMKATME KFKDSHFYKF GKPVIVEGSS SSCDMAWRYR PKDGKAAAFY KDYRRFVIEK SGNCSVSVMG
201: IGEYHSGVNA RKRKRPGFRN SSGGKVDDFA LPVVGEAVND SLPVVESENV FKEGHYLVYS GGGDRCKSMN HFLWSFLCAL GEAQYLNRTL VMDLTLCLSS
301: VYTLSGQNEE GKDFRFYFDF EHLKEAASML DQVQFWADWG KWYKKNGLKL HLVEDFRVTP MKLVDVKDTL IMRKFGTVEP DNYWYRVCEG ETESVVQRPW
401: NLLWKSKRLM EIVSAIASRL NWDYDAIHIE RGDKARNKEV WPNLEKDTSP SSILSTLQDK IEQGRNLYIA TNEPELSFFN PLKDKYKPHF LDEFKDLWDE
501: SSEWYSETTK LNGGNPVEFD GYMRASVDTE VFLRGKKQIE TFNDLTNDCR DGIGTCNVAA S

Arabidopsis Description

At4g12700 [Source:UniProtKB/TrEMBL;Acc:Q9SU16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.