Factsheet for GSMUA_Achr5P27540_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010457_P001	Maize	cytosol	31.38	71.65
TraesCS2A01G146500.1	Wheat	endoplasmic reticulum	66.9	64.45
KRH36835	Soybean	endoplasmic reticulum	74.48	56.1
KRH71696	Soybean	golgi	74.83	55.64
VIT_08s0040g01260.t01	Wine grape	golgi	72.41	52.76
PGSC0003DMT400021597	Potato	golgi	71.38	51.36
Solyc10g078400.1.1	Tomato	golgi	70.69	51.25
TraesCS2B01G171800.1	Wheat	mitochondrion	66.9	49.49
TraesCS2D01G151100.1	Wheat	mitochondrion	66.9	49.49
Zm00001d006931_P002	Maize	plasma membrane	67.59	49.25
EER97624	Sorghum	mitochondrion	67.24	48.99
Bra007268.1-P	Field mustard	golgi	67.59	48.64
HORVU2Hr1G026040.3	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	67.24	48.51
AT3G56750.1	Thale cress	endoplasmic reticulum, golgi, plastid	67.24	48.39
CDY65073	Canola	endoplasmic reticulum, golgi	67.24	48.39
Bra004601.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	65.86	48.35
EER94809	Sorghum	mitochondrion	65.17	48.21
CDY51258	Canola	endoplasmic reticulum, golgi, mitochondrion	66.9	48.14
CDY27198	Canola	endoplasmic reticulum, golgi, mitochondrion	67.24	48.03
AT2G41150.2	Thale cress	endoplasmic reticulum, golgi	66.9	48.02
CDX67655	Canola	endoplasmic reticulum, golgi, mitochondrion	66.21	47.64
CDY23872	Canola	endoplasmic reticulum, golgi, mitochondrion	65.52	47.62
Os03t0366700-01	Rice	plastid	64.83	47.59
CDX79955	Canola	endoplasmic reticulum, golgi, mitochondrion	65.52	47.5
Zm00001d022294_P002	Maize	plastid	26.55	45.83
Zm00001d004819_P001	Maize	mitochondrion	40.69	41.4
Zm00001d029266_P002	Maize	mitochondrion	64.48	39.53
Bra003250.1-P	Field mustard	golgi	51.03	35.49
Zm00001d016377_P001	Maize	nucleus	17.59	35.42
GSMUA_Achr3P09270_001	Banana	plasma membrane	76.9	33.94
GSMUA_Achr6P01490_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	17.93	8.89
GSMUA_Achr4P00760_001	Banana	golgi, plasma membrane	17.24	8.88
GSMUA_Achr5P13200_001	Banana	mitochondrion	14.48	7.97
GSMUA_AchrUn_...	Banana	golgi, mitochondrion, plasma membrane	14.48	7.87
GSMUA_AchrUn_...	Banana	plastid	13.79	6.8
GSMUA_Achr1P03280_001	Banana	mitochondrion	7.24	5.0
GSMUA_Achr5P27530_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	2.76	4.55

Protein Annotations

EnsemblPlants:GSMUA_Achr5P27540_001	EnsemblPlants:GSMUA_Achr5T27540_001	EnsemblPlantsGene:GSMUA_Achr5G27540_001	Gene3D:3.40.50.11350	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006004	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0016757
InterPro:GDP-Fuc_O-FucTrfase	PANTHER:PTHR31469	PANTHER:PTHR31469:SF8	PFAM:PF10250	SEG:seg	UniParc:UPI0002948EB8
UniProt:M0T279	MapMan:35.2	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G27540_001]

Coordinates

chr5:+:28020639..28023733

Molecular Weight (calculated)

33188.7 Da

IEP (calculated)

9.706

GRAVY (calculated)

-0.440

Length

290 amino acids

Sequence
(BLAST)

001: MPSRMCINPI HNKKGILYQP RNASADEMWA ASSCAMDSLY DLSLISSKVT VILDNSKMWS RIVSAGVKLG SKGVAHVEGV SRVDLKENSQ YFNVLLINRT
101: ASPLSWFMEC KERTNHSSVL LPHSFLPMMA ARRLRDAADK IKNILGDYDA IHVRRGDIIK TRKDRFGVER SLHPHLDRDT RPEFIQRRIA KWIPPGRTLY
201: IASNERSPGF FSPLSSSYRL AYSSNFSDIL DPLVDNNYQL FMLERLIWAG ARTFVKTYKE NENDLSLTDD PKKNTKNWQI PVYTIDGEES

Best Arabidopsis Sequence Match ( AT3G56750.1 )
(BLAST)

001: MATMSKAQRT KPTSGSQRLV LFCIVVFSFL LLFSSVISTG KLGLPYQQTL IDYFVWSPRG KRQHSLSEKY LYWGNRIDCP GKNCETCAGL GHQESSLRCA
101: LEEAMFLNRT FVMPSGMCIN PIHNKKGILN RSDNKTTEEG WLGSSCAMDS LYDIDLISEK IPVILDDSKT WHIVLSTSMK LGERGIAHVS GVTRHRLKES
201: HYSNLLIINR TASPLAWFVE CKDRSNRSAV MLPYSFLPNM AAAKLRNAAE KIKAQLGDYD AIHVRRGDKL KTRKDRFGVE RIQFPHLDRD TRPEFILRRI
301: EKRIPRGRTL FIGSNERKPG FFSPLAVRYK LAYSSNFSEI LDPIIENNYQ LFMMERLVMM GAKTYFKTFK EYETDLTLTD DPKKNKNWEI PVYTMDERRE
401: EAS

Arabidopsis Description

AT3g56750/T8M16_80 [Source:UniProtKB/TrEMBL;Acc:Q9LET2]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.