CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi

Predictor Summary:

plastid 2
mitochondrion 3
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51258	Canola	endoplasmic reticulum, golgi, mitochondrion	96.28	96.28
CDY65073	Canola	endoplasmic reticulum, golgi	87.1	87.1
CDY27198	Canola	endoplasmic reticulum, golgi, mitochondrion	87.1	86.45
AT3G56750.1	Thale cress	endoplasmic reticulum, golgi, plastid	85.36	85.36
Bra003250.1-P	Field mustard	golgi	77.92	75.3
CDX79955	Canola	endoplasmic reticulum, golgi, mitochondrion	74.44	75.0
CDY23872	Canola	endoplasmic reticulum, golgi, mitochondrion	73.7	74.44
Zm00001d010457_P001	Maize	cytosol	22.58	71.65
GSMUA_Achr5P27540_001	Banana	cytosol	47.64	66.21
KRH36835	Soybean	endoplasmic reticulum	63.03	65.97
KRH71696	Soybean	golgi	63.28	65.38
TraesCS2A01G146500.1	Wheat	endoplasmic reticulum	47.89	64.12
VIT_08s0040g01260.t01	Wine grape	golgi	62.53	63.32
PGSC0003DMT400021597	Potato	golgi	61.29	61.29
Solyc10g078400.1.1	Tomato	golgi	60.79	61.25
TraesCS2D01G151100.1	Wheat	mitochondrion	56.58	58.16
TraesCS2B01G171800.1	Wheat	mitochondrion	56.58	58.16
EER94809	Sorghum	mitochondrion	56.08	57.65
HORVU2Hr1G026040.3	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	56.58	56.72
Os03t0366700-01	Rice	plastid	55.58	56.71
Zm00001d006931_P002	Maize	plasma membrane	54.84	55.53
EER97624	Sorghum	mitochondrion	54.34	55.03
Zm00001d029266_P002	Maize	mitochondrion	56.08	47.78
Zm00001d004819_P001	Maize	mitochondrion	29.53	41.75
Zm00001d022294_P002	Maize	plastid	16.63	39.88
Zm00001d016377_P001	Maize	nucleus	13.4	37.5
GSMUA_Achr3P09270_001	Banana	plasma membrane	60.05	36.83
CDY27873	Canola	mitochondrion	19.11	14.53
CDX90695	Canola	endoplasmic reticulum, golgi, plastid	19.11	13.97
CDY05025	Canola	endoplasmic reticulum, golgi, plastid	19.11	13.82
CDY00855	Canola	mitochondrion	19.35	13.81

Protein Annotations

EnsemblPlants:CDX67655	EnsemblPlantsGene:GSBRNA2T00098823001	PANTHER:PTHR31469	PANTHER:PTHR31469:SF8	ProteinID:CDX67655	ProteinID:CDX67655.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE43FF	MapMan:35.2	:	:

Description

BnaA07g16950D

Coordinates

chrLK031787:-:1594110..1596057

Molecular Weight (calculated)

45942.5 Da

IEP (calculated)

9.720

GRAVY (calculated)

-0.396

Length

403 amino acids

Sequence
(BLAST)

001: MATMSKSQRT KPSPGSHRLV LLLTVFAFLL LLSSVISTGK LGLPYQQTLI DYFATTPRGK RQHTLSDKYL YWGNRIDCPG KNCETCAGLG HQESSLRCAL
101: EEALFLNRTF VMPSGMCINP THNKKGILDR SDDKATEEGW VGSSCAMDSL YDVDLISEKI PVILDDSKTW HLVLSTSMKL GGRGIAHVYG VSRHRLTESH
201: YSNLLIINRT ASPLAWFVEC KDRGNRSNVM LPYSFLPNMA APSLRKAAEK IKAQLGDYDA IHVRRGDKLK TRKDRLGVER IQFPHLDRDT RPEFILRRIE
301: KKIPHGRTLF IGSNERTPGF FSPLAVRYKL AYSSNFSEVL DPIIKNNYQL FMVERLVMMG AKTFFKTFKE YETDLTLTDD PKKNKNWEIP VYTMEDERKE
401: SVS

Best Arabidopsis Sequence Match ( AT3G56750.1 )
(BLAST)

001: MATMSKAQRT KPTSGSQRLV LFCIVVFSFL LLFSSVISTG KLGLPYQQTL IDYFVWSPRG KRQHSLSEKY LYWGNRIDCP GKNCETCAGL GHQESSLRCA
101: LEEAMFLNRT FVMPSGMCIN PIHNKKGILN RSDNKTTEEG WLGSSCAMDS LYDIDLISEK IPVILDDSKT WHIVLSTSMK LGERGIAHVS GVTRHRLKES
201: HYSNLLIINR TASPLAWFVE CKDRSNRSAV MLPYSFLPNM AAAKLRNAAE KIKAQLGDYD AIHVRRGDKL KTRKDRFGVE RIQFPHLDRD TRPEFILRRI
301: EKRIPRGRTL FIGSNERKPG FFSPLAVRYK LAYSSNFSEI LDPIIENNYQ LFMMERLVMM GAKTYFKTFK EYETDLTLTD DPKKNKNWEI PVYTMDERRE
401: EAS

Arabidopsis Description

AT3g56750/T8M16_80 [Source:UniProtKB/TrEMBL;Acc:Q9LET2]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.